Variation in the mechanical properties of flight feathers of the blackcap Sylvia atricapilla in relation to migration

Migration causes temporal and energetic constraints during plumage development, which can compromise feather structure and function. In turn, given the importance of a good quality of flight feathers in migratory movements, selection may have favoured the synthesis of feathers with better mechanical properties than expected from a feather production constrained by migration necessities. However, no study has assessed whether migratory behaviour affects the relationship between the mechanical properties of feathers and their structural characteristics. We analysed bending stiffness (a feather mechanical property which is relevant to birds’ flight), rachis width and mass (two main determinants of variation in bending stiffness) of wing and tail feathers in migratory and sedentary blackcaps Sylvia atricapilla. Migratory blackcaps produced feathers with a narrower rachis in both wing and tail, but their feathers were not significantly lighter; in addition, bending stiffness was higher in migratory blackcaps than in sedentary blackcaps. Such unexpected result for bending stiffness remained when we statistically controlled for individual variation in rachis width and feather mass, which suggests the existence of specific mechanisms that help migratory blackcaps to improve the mechanical behaviour of their feathers under migration constraints.     

Mechanical and structural adaptations to migration in the flight feathers of a Palaearctic passerine

Current avian migration patterns in temperate regions have been developed during the glacial retreat and subsequent colonization of the ice‐free areas during the Holocene. This process resulted in a geographic gradient of greater seasonality as latitude increased that favoured migration‐related morphological and physiological (co)adaptations. Most evidence of avian morphological adaptations to migration comes from the analysis of variation in the length and shape of the wings, but the existence of intra‐feather structural adjustments has been greatly overlooked despite their potential to be under natural selection. To shed some light on this question, we used data from European robins Erithacus rubecula overwintering in Campo de Gibraltar (Southern Iberia), where sedentary robins coexist during winter with conspecifics showing a broad range of breeding origins and, hence, migration distances. We explicitly explored how wing length and shape, as well as several functional (bending stiffness), developmental (feather growth rate) and structural (size and complexity of feather components) characteristics of flight feathers, varied in relation to migration distance, which was estimated from the hydrogen stable isotope ratios of the summer‐produced tail feathers. Our results revealed that migration distance not only favoured longer and more concave wings, but also promoted primaries with a thicker dorsoventral rachis and shorter barb lengths, which, in turn, conferred more bending stiffness to these feathers. We suggest that these intra‐feather structural adjustments could be an additional, largely unnoticed, adaptation within the avian migratory syndrome that might have the potential to evolve relatively quickly to facilitate the occupation of seasonal environments.     

Deciphering the complex three-way interaction between the non-integrin laminin receptor,galectin-3 and Neisseria meningitidis

The non-integrin laminin receptor (LAMR1/RPSA) and galectin-3 (Gal-3) are multi-functional host molecules with roles in diverse pathological processes, particularly of infectious or oncogenic origins. Using bimolecular fluorescence complementation and confocal imaging, we demonstrate that the two proteins homo- and heterodimerize, and that each isotype forms a distinct cell surface population. We present evidence that the 37 kDa form of LAMR1 (37LRP) is the precursor of the previously described 67 kDa laminin receptor (67LR), whereas the heterodimer represents an entity that is distinct from this molecule. Site-directed mutagenesis confirmed that the single cysteine (C¹⁷³) of Gal-3 or lysine (K¹⁶⁶) of LAMR1 are critical for heterodimerization. Recombinant Gal-3, expressed in normally Gal-3-deficient N2a cells, dimerized with endogenous LAMR1 and led to a significantly increased number of internalized bacteria (Neisseria meningitidis), confirming the role of Gal-3 in bacterial invasion. Contact-dependent cross-linking determined that, in common with LAMR1, Gal-3 binds the meningococcal secretin PilQ, in addition to the major pilin PilE. This study adds significant new mechanistic insights into the bacterial–host cell interaction by clarifying the nature, role and bacterial ligands of LAMR1 and Gal-3 isotypes during colonization.     

Phase variable genes of Campylobacter jejuni exhibit high mutation rates and specific mutational patterns but mutability is not the major determinant of population structure during host colonization

Phase variation of surface structures occurs in diverse bacterial species due to stochastic, high frequency, reversible mutations. Multiple genes of Campylobacter jejuni are subject to phase variable gene expression due to mutations in polyC/G tracts. A modal length of nine repeats was detected for polyC/G tracts within C. jejuni genomes. Switching rates for these tracts were measured using chromosomally-located reporter constructs and high rates were observed for cj1139 (G8) and cj0031 (G9). Alteration of the cj1139 tract from G8 to G11 increased mutability 10-fold and changed the mutational pattern from predominantly insertions to mainly deletions. Using a multiplex PCR, major changes were detected in 'on/off' status for some phase variable genes during passage of C. jejuni in chickens. Utilization of observed switching rates in a stochastic, theoretical model of phase variation demonstrated links between mutability and genetic diversity but could not replicate observed population diversity. We propose that modal repeat numbers have evolved in C. jejuni genomes due to molecular drivers associated with the mutational patterns of these polyC/G repeats, rather than by selection for particular switching rates, and that factors other than mutational drift are responsible for generating genetic diversity during host colonization by this bacterial pathogen.     

Additions to the Mysid Fauna (Crustacea: Mysidacea) from Coastal Waters of Oman, Including Descriptions of Two New Species

Two new species of mysid shrimps are described from shallow coastal waters of Northern Oman. Haplostylus quadrispinosus sp. nov. is primarily distinguished from allied species by the arrangement and size of lateral spines on the telson. The form of the telson and exopod of the 4th male pleopod characterize a second new species, Anisomysis arabica sp. nov. A third species Mysidopsis kenyana, was previously recorded only from East Africa and its presence in samples considerably extends its geographical distribution. Four mysid species are now documented from coastal waters of Oman.     

Fruit tracking between sites and years by birds in Mediterranean wintering grounds

Knowledge of the ability of birds to track spatiotemporal variation in fruit distribution is essential for understanding plant-frugivore interactions. Arguably, although total fruit availability sets an upper limit to the number of birds that can exploit a habitat patch, not all species can equally distribute abundance according to variation in fruit resources. To explore this, we studied bird and fruit abundance in 1999–2005 in Mediterranean scrublands and woodlands of southern Spain. We analysed whether changes of fruit abundance in eight different sites during six winters could predict numerical changes of a set of frugivorous passerines of the area (blackcap Sylvia atricapilla , Sardinian warbler S. melanocephala , robin Erithacus rubecula , song thrush Turdus philomelos and blackbird T. merula ). We also investigated if all frugivores together tracked fruits better than individual species, thereby supporting a shared use of resources. Results showed strong inter-specific differences. Only the most abundant species (blackcaps and robins) tracked the spatial patterning of food despite strong differences in the use of space (vagrant and territorial, respectively). This suggests plastic behaviour of territorial robins, with individuals changing from strictly territorial to wandering, a flexibility that would favour between-site numerical arrangements according to food resources. Annual changes in bird numbers were independent of the availability of fruits, except for blackcaps, an abundant vagrant bird that tracked inter-winter changes in fruit abundance. The abundance of blackcaps fitted the spatiotemporal patterning of fruit resources better than the whole guild of frugivorous birds, inconsistent with the idea that these species track together the changing availability of fruit resources.     

Idiomysis mozambicus, a new mysid species (crustacea: mysidacea) from Mozambique

Idiomysis mozambicus is described from coastal waters of Mozambique. The species can be distinguished from the other species of the genus by the one-segmented antennal scale, the two-segmented exopod of the fourth male pleopod and the bluntly pointed rostrum.     

Carboxyl residues in the active site of human phenol sulfotransferase (SULT1A1)

The carboxyl-specific amino acid modification reagent, Woodward's reagent K (WK), was utilized to characterize carboxyl residues (Asp and Glu) in the active site of human phenol sulfotransferase (SULT1A1). SULT1A1 was purified using the pMAL-c2 expression system in E. coli. WK inactivated SULT1A1 activity in a time- and concentration-dependent manner. The inactivation followed first-order kinetics relative to both SULT1A1 and WK. Both phenolic substrates and adenosine 3'-phosphate 5'-phosphosulfate (PAPS) protected against the inactivation, which suggests the carboxyl residue modification causing the inactivation took place within the active site of the enzyme. With partially inactivated SULT1A1, both V(max) and K(m) changed for PAPS, while for phenolic substrates, V(max) decreased and K(m) did not change significantly. A computer model of the three-dimensional structure of SULT1A1 was constructed based on the mouse estrogen sulfotransferase (mSULT1E1) X-ray crystal structure. According to the model, Glu83, Asp134, Glu246, and Asp263 are the residues likely responsible for the inactivation of SULT1A1 by WK. According to these results, five SULT1A1 mutants, E83A, D134A, E246A, D263A, and E151A, were generated (E151A as control mutant). Specific activity determination of the mutants demonstrated that E83A and D134A lost almost 100% of the catalytic activity. E246A and D263A also decreased SULT1A1 activity, while E151A did not change SULT1A1 catalytic activity significantly. This work demonstrates that carboxyl residues are present in the active site and are important for SULT1A1 catalytic activity. Glu83 and E134 are essential amino acids for SULT1A1 catalytic activity.     

BioText Search Engine: beyond abstract search

The BioText Search Engine is a freely available Web-based application that provides biologists with new ways to access the scientific literature. One novel feature is the ability to search and browse article figures and their captions. A grid view juxtaposes many different figures associated with the same keywords, providing new insight into the literature. An abstract/title search and list view shows at a glance many of the figures associated with each article. The interface is carefully designed according to usability principles and techniques. The search engine is a work in progress, and more functionality will be added over time. Availability: http://biosearch.berkeley.edu.