Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR

Background  

In real-time PCR data analysis, the cycle threshold (CT) method is currently the gold standard. This method is based on an assumption of equal PCR efficiency in all reactions, and precision may suffer if this condition is not met. Nonlinear regression analysis (NLR) or curve fitting has therefore been suggested as an alternative to the cycle threshold method for absolute quantitation. The advantages of NLR are that the individual sample efficiency is simulated by the model and that absolute quantitation is possible without a standard curve, releasing reaction wells for unknown samples. However, the calculation method has not been evaluated systematically and has not previously been applied to a TaqMan platform. Aim: To develop and evaluate an automated NLR algorithm capable of generating batch production regression analysis.     

Ruthenium red binding to cell coat in neoplastic neurogenic cell lines in culture.

The cell coat of cultivated fetal rat brain cells as well as malignant rat neurogenic cell lines in culture were studied by transmission electron microscopy with the ruthenium red staining technique. Some of the transformed cell lines demonstrated alteration in the bindng properties of ruthenium red to the cell surface. Otherwise no significant correlation between the visualized cell coat thickness and neoplastic transformation was noted.     

Aryl hydrocarbon hydroxylase: Degradation of product due to contaminant in acetone

A contaminant present in reagent grade acetone causes degradation of fluorescent phenolic metabolites of benzo(a)pyrene as measured in the aryl hydrocarbon hydroxylase assay. Although the contaminant was not identified, its properties suggest that it is a relatively volatile organic material, possibly an oxidizing agent. The acetone may be readily purified by distillation.     

Intra- and interspecific life history differences in sympatric grayling and brown trout in a Norwegian reservoir

Grayling Thymallus thymallus in Lake Aursjøen, Norway, showed a remarkably uniform growth pattern throughout life, whereas brown trout Salmo trutta showed far more variation. In addition, a narrower age-length interval of maturation was found in grayling. The restricted life history variation in grayling is discussed and it is suggested that all grayling of Lake Aursjøen experience similar environmental conditions as juveniles, which induces low phenotypic variation. In contrast the existence of several spawning populations, adapted to as many as 28 different tributaries, may have created large life history variation in Aursjøen trout. Logistic models revealed that both age and length had significant, simultaneous effects on the maturation of both species. Furthermore, the sexes of trout differed in maturation patterns, i.e. males matured earlier and at smaller sizes than female conspecifics, but no difference was found between the sexes of grayling. In addition, larger sex-specific growth differences were found in trout. An absence of early maturing males in grayling and their presence in trout is discussed as a possible explanation of the restricted life history variation found between sexes of grayling. Male grayling experienced a larger mortality rate than did females, whereas no such differences were found in trout. It is suggested that grayling males invest more in reproduction than do females, due primarily to large investments in breeding behaviour. The equal mortality rates found for both sexes of trout, albeit males starting to spawn earlier than females, is probably explained by a female-selective fishing mortality.     

Culture of rabbit pulmonary Clara cells

Rabbit pulmonary Clara cells isolated by centrifugal elutriation have been cultured for several weeks. Clara cells generally adhered poorly to plastic but the cells did attach to coated substrates. A selected medium supported serial subculture of Clara cells for 4-5 passages (1:2 split). The medium consisted of a basal nutrient medium, alpha MEM, supplemented with insulin, transferrin, epidermal growth factor, D-glucose, biotin, alpha-tocopherol, pituitary extract, trace elements and 2% Sephadex G-10-filtered FBS. Freshly prepared Clara cells showed high capacity to activate 2-aminofluorene (AF) to mutagenic products. However, after 6 weeks of culture the mutagenic activation of AF was reduced by 92.5% indicating loss of cytochrome P-450.