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951.
Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.) 总被引:1,自引:0,他引:1
Ram Kumar Sharma Pankaj Bhardwaj Rinu Negi Trilochan Mohapatra Paramvir Singh Ahuja 《BMC plant biology》2009,9(1):1-24
Background
Despite great advances in genomic technology observed in several crop species, the availability of molecular tools such as microsatellite markers has been limited in tea (Camellia sinensis L.). The development of microsatellite markers will have a major impact on genetic analysis, gene mapping and marker assisted breeding. Unigene derived microsatellite (UGMS) markers identified from publicly available sequence database have the advantage of assaying variation in the expressed component of the genome with unique identity and position. Therefore, they can serve as efficient and cost effective alternative markers in such species.Results
Considering the multiple advantages of UGMS markers, 1,223 unigenes were predicted from 2,181 expressed sequence tags (ESTs) of tea (Camellia sinensis L.). A total of 109 (8.9%) unigenes containing 120 SSRs were identified. SSR abundance was one in every 3.55 kb of EST sequences. The microsatellites mainly comprised of di (50.8%), tri (30.8%), tetra (6.6%), penta (7.5%) and few hexa (4.1%) nucleotide repeats. Among the dinucleotide repeats, (GA)n.(TC)n were most abundant (83.6%). Ninety six primer pairs could be designed form 83.5% of SSR containing unigenes. Of these, 61 (63.5%) primer pairs were experimentally validated and used to investigate the genetic diversity among the 34 accessions of different Camellia spp. Fifty one primer pairs (83.6%) were successfully cross transferred to the related species at various levels. Functional annotation of the unigenes containing SSRs was done through gene ontology (GO) characterization. Thirty six (60%) of them revealed significant sequence similarity with the known/putative proteins of Arabidopsis thaliana. Polymorphism information content (PIC) ranged from 0.018 to 0.972 with a mean value of 0.497. The average heterozygosity expected (H E ) and observed (H o ) obtained was 0.654 and 0.413 respectively, thereby suggesting highly heterogeneous nature of tea. Further, test for IAM and SMM models for the UGMS loci showed excess heterozygosity and did not show any bottleneck operating in the tea population.Conclusion
UGMS markers identified and characterized in this study provided insight about the abundance and distribution of SSR in the expressed genome of C. sinensis. The identification and validation of 61 new UGMS markers will not only help in intra and inter specific genetic diversity assessment but also be enriching limited microsatellite markers resource in tea. Further, the use of these markers would reduce the cost and facilitate the gene mapping and marker-aided selection in tea. Since, 36 of these UGMS markers correspond to the Arabidopsis protein sequence data with known functions will offer the opportunity to investigate the consequences of SSR polymorphism on gene functions. 相似文献952.
The carotenoid synthetic genes, crtM and crtN, derived from Staphylococcus aureus, were introduced into B. subtilis, resulting in yellow pigmentation. Absorption maxima of pigments and MALDI-TOF mass spectrometry demonstrated that the pigmented
strain accumulated two C30 carotenoids, 4,4′-diapolycopene and 4,4′-diaponeurosporene. A survival test using H2O2 revealed that the pigmented strain was more resistant to oxidative stress than the strain harboring an empty-vector. These
findings indicate that B.
subtilis can produce carotenoids, and the strain accumulating the carotenoids, CarotenoBacillus, will become a basal host for production
of C30 carotenoids and evaluation of their antioxidative effects. 相似文献
953.
Georgi Z. Genchev Morten Källberg Gamze Gürsoy Anuradha Mittal Lalit Dubey Ognjen Perisic Gang Feng Robert Langlois Hui Lu 《Cell biochemistry and biophysics》2009,55(3):141-152
Efficient communication between the cell and its external environment is of the utmost importance to the function of multicellular
organisms. While signaling events can be generally characterized as information exchange by means of controlled energy conversion,
research efforts have hitherto mainly been concerned with mechanisms involving chemical and electrical energy transfer. Here,
we review recent computational efforts addressing the function of mechanical force in signal transduction. Specifically, we
focus on the role of steered molecular dynamics (SMD) simulations in providing details at the atomic level on a group of protein
domains, which play a fundamental role in signal exchange by responding properly to mechanical strain. We start by giving
a brief introduction to the SMD technique and general properties of mechanically stable protein folds, followed by specific
examples illustrating three general regimes of signal transfer utilizing mechanical energy: purely mechanical, mechanical
to chemical, and chemical to mechanical. Whenever possible the physiological importance of the example at hand is stressed
to highlight the diversity of the processes in which mechanical signaling plays a key role. We also provide an overview of
future challenges and perspectives for this rapidly developing field. 相似文献
954.
The chitosan with three-dimensional porous structure greatly increased the effective electrode surface for loading of platinum nanoparticles and promoted efficient electron transfer. The resulting biosensor had a response time (within 5 s) and a linear response from 6 μM to 4.2 mM glucose with a detection limit of 2 μM (S/N = 3). Moreover, the methodology can be applied for the immobilization of other enzymes. 相似文献
955.
956.
Athanasios Tragiannidis Zoe Dorothea Pana Theodotis Papageorgiou Emmanuel Hatzipantelis Maria Hatzistilianou Fani Athanassiadou 《Journal of medical case reports》2011,5(1):407
Introduction
Transient myeloproliferative disorder is a hematologic abnormality characterized by an uncontrolled proliferation of myeloblasts in peripheral blood and bone marrow that primarily affects newborns and babies with Down syndrome. Tumor lysis syndrome is rarely associated with transient myeloproliferative disorder.Case presentation
Transient myeloproliferative disorder was diagnosed in a seven-day-old baby girl with Down syndrome, who was referred to our department due to hyperleukocytosis. Our patient developed tumor lysis syndrome, successfully treated with rasburicase, as a complication of transient myeloproliferative disorder resulting from rapid degradation of myeloid blasts after initiation of effective chemotherapy.Conclusions
Tumor lysis syndrome is rarely reported as a complication of transient myeloproliferative disorder. To the best of our knowledge, this is the first case of a newborn with Down syndrome and transient myeloproliferative disorder treated with rasburicase for developing tumor lysis syndrome.957.
Ahmed S Abdel-Moneim Ahmad E Abdel-Ghany Salama AS Shany 《Journal of biomedical science》2010,17(1):25
Background
The highly pathogenic H5N1 is a major avian pathogen that crosses species barriers and seriously affects humans as well as some mammals. It mutates in an intensified manner and is considered a potential candidate for the possible next pandemic with all the catastrophic consequences. 相似文献958.
Michel Besserve Bernhard Schölkopf Nikos K. Logothetis Stefano Panzeri 《Journal of computational neuroscience》2010,29(3):547-566
Characterizing how different cortical rhythms interact and how their interaction changes with sensory stimulation is important
to gather insights into how these rhythms are generated and what sensory function they may play. Concepts from information
theory, such as Transfer Entropy (TE), offer principled ways to quantify the amount of causation between different frequency
bands of the signal recorded from extracellular electrodes; yet these techniques are hard to apply to real data. To address
the above issues, in this study we develop a method to compute fast and reliably the amount of TE from experimental time series
of extracellular potentials. The method consisted in adapting efficiently the calculation of TE to analog signals and in providing
appropriate sampling bias corrections. We then used this method to quantify the strength and significance of causal interaction
between frequency bands of field potentials and spikes recorded from primary visual cortex of anaesthetized macaques, both
during spontaneous activity and during binocular presentation of naturalistic color movies. Causal interactions between different
frequency bands were prominent when considering the signals at a fine (ms) temporal resolution, and happened with a very short
(ms-scale) delay. The interactions were much less prominent and significant at coarser temporal resolutions. At high temporal
resolution, we found strong bidirectional causal interactions between gamma-band (40–100 Hz) and slower field potentials when
considering signals recorded within a distance of 2 mm. The interactions involving gamma bands signals were stronger during
movie presentation than in absence of stimuli, suggesting a strong role of the gamma cycle in processing naturalistic stimuli.
Moreover, the phase of gamma oscillations was playing a stronger role than their amplitude in increasing causations with slower
field potentials and spikes during stimulation. The dominant direction of causality was mainly found in the direction from
MUA or gamma frequency band signals to lower frequency signals, suggesting that hierarchical correlations between lower and
higher frequency cortical rhythms are originated by the faster rhythms. 相似文献
959.
960.
Ana Carolina Cuzzuol Fracalossi Sandra Regina Miranda Celina Tijuko Fujiyama Oshima Marcello Franco Daniel Araki Ribeiro 《Journal of molecular histology》2010,41(1):19-25
Matrix metalloproteinases (MMPs) are implicated in a wide range of physiological and pathological processes, including morphogenesis,
wound healing, angiogenesis, inflammation, and cancer. The purpose of this study was to characterize the role of MMPs as depicted
by the expression of MMP-2 and MMP-9 during 4-nitroquinoline 1-oxide-induced rat tongue carcinogenesis. Male Wistar rats were
distributed into three groups of 10 animals each and treated with 4-nitroquinoline 1-oxide solution at 50 ppm through their
drinking water for 4, 12, and 20 weeks. Ten animals were used as control group. No histopathological abnormalities were induced
in the epithelium after 4 weeks of carcinogen exposure; however, immunoexpression of MMP-2 was noticed. The same picture occurred
to MMP-9, in which positive expression was detected for this immunomarker. MMP-2 and MMP-9 showed positive expression either
in pre-neoplastic lesions at 12 weeks following carcinogen exposure or in well-differentiated squamous cell carcinoma induced
after 20 weeks of treatment with 4NQO. Taken together, our results support the belief that MMP-2 and MMP-9 play important
role during malignant transformation and conversion of oral mucosa as assessed by immunohistochemistry. 相似文献