Day‐flying moths are smaller: evidence for ecological costs of being large

Research on evolutionary forces determining optimal body sizes has primarily relied on experimental evaluation of respective selective pressures. Accounting for among‐species variation through application of phylogenetic comparative methods is a complementary although little used approach. It enables the direct association of body size values with particular environments. Using phylogenetically explicit comparative analyses, we show that small body size is associated with diurnal (rather than nocturnal) activity of adults among temperate species of the moth family Geometridae. The association of an exclusively adult trait with species‐specific body size suggests that optimal body sizes are at least partly determined by the costs being a large adult, as opposed to the more frequently considered costs of attaining large size. It appears likely that size‐selective predation by insectivorous birds is the primary factor responsible for selection against large body size in day‐flying moths.     

The growth rate control in Escherichia coli at near to maximum growth rates: the A-stat approach

The growth characteristics of Escherichia coli K-12 in the continuous culture with a smooth increase in the dilution rate (A-stat) of various carbon sources (glucose, acetate, succinate, glycerol, lactate, acetate + succinate, casamino, acids + glucose) were studied. For all substrates studied the maximum value of specific respiration rate, Q _O2, remained between 14–18 mmol O₂ h^-1 g dwt^-1 and the maximum growth rate varied from 0.22 h-¹ on acetate to 0.77 h^-1 on glucose + casamino acids. After the respiratory capacity of the cells was exhausted at growth rates µ < µ_crit, the growth yield Y_XO2, increased slightly when the dilution rate increased. The maximum growth rate of Escherichia coli K12 was dependent on growth yield, respiratory capacity and glycolytic capacity of the strain. Analysis of the cultivation data using a stoichiometric flux model indicated that ATP synthesis in E. coli exceeds by two-fold that (theoretically) required to build up biomass. The experimental value of m_ATP < 4 mmol ATP h^-1 g dwt^-1 determined from A-stat cultivation data was low compared with the calculated unproductive hydrolysis of ATP (64–103 mmole ATP g dwt^-1).     

Automatic laboratory-scale fed-batch procedure for production of recombinant proteins using inducible expression systems of Escherichia coli

Summary An automatic fed-batch procedure for the production of recombinant proteins in Escherichia coli was developed. Using glycerol as carbon source and by controlling the growth rate by using feed-forward algorithm, enabled high specific expression level (10–20 % of total cell protein) at high cell densities (20 g dry wt/l) to be achieved: rat and human soluble catechol-O-methyltransferase, calf prochymosin, and human troponin C were expressed with nearly 50-fold higher volumetric yield compared to the conventional (batch) procedures.     

Beringian standstill and spread of Native American founders

Native Americans derive from a small number of Asian founders who likely arrived to the Americas via Beringia. However, additional details about the initial colonization of the Americas remain unclear. To investigate the pioneering phase in the Americas we analyzed a total of 623 complete mtDNAs from the Americas and Asia, including 20 new complete mtDNAs from the Americas and seven from Asia. This sequence data was used to direct high-resolution genotyping from 20 American and 26 Asian populations. Here we describe more genetic diversity within the founder population than was previously reported. The newly resolved phylogenetic structure suggests that ancestors of Native Americans paused when they reached Beringia, during which time New World founder lineages differentiated from their Asian sister-clades. This pause in movement was followed by a swift migration southward that distributed the founder types all the way to South America. The data also suggest more recent bi-directional gene flow between Siberia and the North American Arctic.     

High-frequency metabolism study in a large and shallow temperate lake reveals seasonal switching between net autotrophy and net heterotrophy

Respiratory CO₂ release from inland waters is a major process in the global carbon cycle, retaining more than half of the carbon flux from terrestrial sources that otherwise would reach the sea. The strongly lake type-specific balance between primary production and respiration determines whether a lake acts regionally as a net sink or source of CO₂. This study presents two-year (2009, 2010) results of high-frequency metabolism measurements in the large and shallow polymictic eutrophic Lake V?rtsj?rv (area 270?km²; mean depth 2.8?m). We estimated the net ecosystem production (NEP), community respiration (R) and gross primary production (GPP) from continuous measurements of oxygen, irradiance, wind and water temperature. A sinusoidal model fitted to the calculated metabolic rates showed the prevalence of net autotrophy (mean GPP:R?>?1) from early spring until August/September, whereas during the rest of the year heterotrophy (mean GPP:R?2 neutral on an annual basis. Community respiration lagged behind GPP by approximately 2?weeks, which could be explained by the bulk of the phytoplankton biomass accounted for by filamentous cyanobacteria that are considered mostly inedible to zooplankton, and the seasonally increasing role of sediment resuspension. In the warmer year 2010, the seasonal peaks of GPP, R and NEP were synchronously shifted nearly 1?month earlier compared with 2009. The strong stimulating effect of temperature on both GPP and R and its negative effect on NEP revealed by the multiple regression analysis suggests increasing metabolic rates and increasing heterotrophy in this lake type in a warmer climate.     

Seasonality Pattern of Biomass Accumulation in a Drifting Furcellaria Lumbricalis Community in the Waters of the West Estonian Archipelago, Baltic Sea

A free-floating, loose form of Furcellaria lumbricalis (Huds.) Lamour is rare in the Baltic Sea area. Kassari Bay, situated in the West Estonian Archipelago Sea area contains the largest known community of this kind. Here the free-floating mixed Furcellaria lumbricalis-Coccotylus truncatus (Paela) M. J. Wynne et J. N. Heine community inhabits sandy bottom, covering up to 120 km². Commercial exploitation of the community started in 1966 and has led to regular monitoring surveys for the quantification of the commercial resource. The aim of the present study was to determine the potential growth rates of the two community-forming species as well as to test different environmental factors affecting their growth. Results showed that the highest growth rates were measured in shallower depths (4 m) for both species. The seasonal growth pattern was also very similar for both species, showing the highest growth rates during the beginning of summer. Incubation of both species in another sea area with apparently similar basic environmental conditions (the northern part of the Gulf of Riga, Kõiguste Bay) resulted in significantly lower growth rates during the whole incubation period.     

Size-dependent predation risk in tree-feeding insects with different colouration strategies: a field experiment

1. Body size is positively correlated with fecundity in various animals, but the factors that counterbalance the resulting selection pressure towards large size are difficult to establish. Positively size-dependent predation risk has been proposed as a selective factor potentially capable of balancing the fecundity advantage of large size.
2. To construct optimality models of insect body size, realistic estimates of size-dependent predation rates are necessary. Moreover, prey traits such as colouration should be considered, as they may substantially alter the relationship between body size and mortality risk.
3. To quantify mortality patterns, we conducted field experiments in which we exposed cryptic and conspicuous artificial larvae of different sizes to bird predators, and recorded the incidence of bird attacks.
4. The average daily mortality rate was estimated to vary between 4% and 10%. In both cryptic and conspicuous larvae, predation risk increased with prey size, but the increase tended to be steeper in the conspicuous group. No main effect of colour type was found. All the quantitative relationships were reasonably consistent across replicates.
5. Our results suggest that the size dependence of mortality risk in insect prey is primarily determined by the probability of being detected by a predator rather than by a size-dependent warning effect associated with conspicuous colouration. Our results therefore imply that warningly coloured insects do not necessarily benefit more than the cryptic species from large body size, as has been previously suggested.     

Explaining the Imperfection of the Molecular Clock of Hominid Mitochondria

The molecular clock of mitochondrial DNA has been extensively used to date various genetic events. However, its substitution rate among humans appears to be higher than rates inferred from human-chimpanzee comparisons, limiting the potential of interspecies clock calibrations for intraspecific dating. It is not well understood how and why the substitution rate accelerates. We have analyzed a phylogenetic tree of 3057 publicly available human mitochondrial DNA coding region sequences for changes in the ratios of mutations belonging to different functional classes. The proportion of non-synonymous and RNA genes substitutions has reduced over hundreds of thousands of years. The highest mutation ratios corresponding to fast acceleration in the apparent substitution rate of the coding sequence have occurred after the end of the Last Ice Age. We recalibrate the molecular clock of human mtDNA as 7990 years per synonymous mutation over the mitochondrial genome. However, the distribution of substitutions at synonymous sites in human data significantly departs from a model assuming a single rate parameter and implies at least 3 different subclasses of sites. Neutral model with 3 synonymous substitution rates can explain most, if not all, of the apparent molecular clock difference between the intra- and interspecies levels. Our findings imply the sluggishness of purifying selection in removing the slightly deleterious mutations from the human as well as the Neandertal and chimpanzee populations. However, for humans, the weakness of purifying selection has been further exacerbated by the population expansions associated with the out-of Africa migration and the end of the Last Ice Age.     

Effect of chlorophyll sampling design on water quality assessment in thermally stratified lakes

In order to adequately assess the ecological status of thermally stratified lakes based on chlorophyll, the sampling must cover all productive layers of the water column. Missing the deep chlorophyll maxima (DCM) that often occur in the meta- or hypolimnion of transparent lakes supported by sufficient illumination and good nutrient availability may cause serious underestimation of the productivity and lead to misclassification of the lake ecological status. There is no commonly accepted sampling design for stratified lakes, and various monitoring guides suggest controversial designs. Our aim was to find some robust criteria to assess the probability of occurrence of a DCM and estimate the differences in measured mean chlorophyll concentrations caused by various sampling designs. Our theoretical model showed that the probability of occurrence of a DCM increases with increasing water transparency and decreasing lake size. Empirical data from Italian and Estonian stratified lakes confirmed the results. Testing of different sampling designs on lakes with full measured chlorophyll profiles available showed that taking only surface layer samples will lead with a high probability to an underestimation of the chlorophyll concentration in the trophogenic layer. In order not to miss the Chl peak in stratified lakes, in most cases it would be more precautious not to limit the sampling to the well-mixed epilimnion but to extend it to the whole euphotic layer. Sampling the epilimnion instead of the euphotic zone could cause up to a 70% underestimation of the chlorophyll concentration, an error that would cause a misclassification of the lake by one or even two status classes in a 5-class assessment system. In most cases, the 2.5 * Secchi depths proved a suitable criterion of the sampling depth and only in the case of surface scums, would sampling of a 3 * Secchi depth layer be recommended in order not to miss the deep chlorophyll maximum.