Understanding high ε-poly-l-lysine production by Streptomyces albulus using pH shock strategy in the level of transcriptomics

Journal of Industrial Microbiology & Biotechnology - ε-Poly-l-lysine (ε-PL) is a natural food preservative, which exhibits antimicrobial activity against a wide spectra of...     

Correction to: High-yield production of l-serine from glycerol by engineered Escherichia coli

Journal of Industrial Microbiology & Biotechnology - Unfortunately, the order of the figures 1-4 has been positioned wrongly in the print published article     

HMGB1 release from trophoblasts contributes to inflammation during Brucella melitensis infection

Brucella melitensis infection causes acute necrotizing inflammation in pregnant animals; however, the pathophysiological mechanisms leading to placentitis are unknown. Here, we demonstrate that high‐mobility group box 1 (HMGB1) acts as a mediator of placenta inflammation in B. melitensis‐infected pregnant mice model. HMGB1 levels were increased in trophoblasts or placental explant during B. melitensis infection. Inhibition of HMGB1 activity with neutralising antibody significantly reduced the secretion of inflammatory cytokines in B. melitensis‐infected trophoblasts or placenta, whereas administration of recombinant HMGB1 (rHMGB1) increased the inflammatory response. Mechanistically, this decreased inflammatory response results from inhibition of HMGB1 activity, which cause the suppression of both mitogen‐activated protein kinases and nuclear factor kappa‐light‐chain‐enhancer of activated B cells (NF‐κB) activation. Moreover, neutralising antibody to HMGB1 prevented B. melitensis infection‐induced activation of nicotinamide adenine dinucleotide phosphate (NADPH) oxidase in trophoblasts. In contrast, in vitro stimulation of trophoblasts with rHMGB1 caused activation of NADPH oxidase and increased the production of ROS, which contributes to high bacterial burden within trophoblasts or placenta. In vivo, treatment with anti‐HMGB1 antibody increases the number of Brucella survival within placenta in B. melitensis‐infected pregnant mice but successfully reduced the severity of placentitis and abortion.     

RELATIONSHIPS BETWEEN REPRODUCTION ACTIVITIES OF FISHES WITH DRIFTING EGGS AND ENVIRONMENTAL FACTORS IN THE CHISHUI RIVER北大核心CSCD

The Chishui River is the only undammed first-order tributary of the upper Yangtze River Basin. It is an important part of the “National Nature Reserve for Rare and Endemic Fishes of the Upper Yangtze River”, which plays important roles in fish conservation. To determine main environmental factors that affect the breeding activities of fishes with drifting eggs in this river, investigations on fish resources of early life stages were carried out in Chishui Reach from March to July in 2015 and April to August in 2016. A total of 27 species of fish early resources, belonging to 3 orders, 7 families and 22 genera, were collected during the investigation period. Nine of these species Pseudolaubuca engraulis, Squalidus argentatus, Gobiobotia filifer, Botia superciliaris, Parabotia fasciata, Parabotia bimaculata, Leptobotia elongate, Leptobotia taeniops and Lepturichthys fimbriata laid drifting eggs in the running water. Canonical Correspondence Analysis (CCA) revealed various breeding environmental requirements for these species. Specially, B. superciliari, P. fasciata, P. bimaculata, L. elongate, L. taeniops and L. fimbriata tended to lay eggs when the water discharge was increasing, while P. engraulis and S. argentatus showed an opposite trend. Additionally, G. filifer preformed differently between 2015 and 2016. In the low flow year, their reproductive activities were positively associated with the water discharge. However, in the high flow year, no significant relation between the reproduction activities and water discharge was observed. These results strengthen our understanding of reproductive behavior of different fish species and provide valuable insights into fish conservation. © 2019, Institute of Hydrobiology, Chinese Academy of Sciences. All rights reserved.     

Surface analysis of sheep menisci after meniscectomy via infrared attenuated total reflection spectroscopy

Menisci are very important fibrocartilaginous tissue, which maintain biomechanical functions and physiological stabilization of knee joint. Meniscectomy is known as a surgery to recover partial functions from acute meniscus tears. However, the late consequences of total or partial meniscectomy include signs of osteoarthritis and even ligament instability. Infrared attenuated total reflection (IR‐ATR) spectroscopy is a very useful technique, which can reveal molecular characteristics via the analysis of vibrational bands. The present study has employed IR‐ATR spectroscopy to investigate sheep menisci samples after meniscectomy in a label‐free fashion. Several differences of peak absorbance change and peak shift were observed between the native healthy samples and the meniscectomy samples in distinct IR wavenumber regions, such as amide I band, amide II band, C‐H bending band as well as the sugar band region. Combining the results from the collagen protein IR spectra, it can be speculated that six months after meniscectomy collagen fibrils on the incision lose its ordered arrangement and a decrease in the triple helical structure of collagen fibril is observed. In addition, the collagen fibrils and proteoglycan content might also be slight varied after meniscectomy.      

Development of high‐resolution DNA barcodes for Dioscorea species discrimination and phylogenetic analysis

The genus Dioscorea is widely distributed in tropical and subtropical regions, and is economically important in terms of food supply and pharmaceutical applications. However, DNA barcodes are relatively unsuccessful in discriminating between Dioscorea species, with the highest discrimination rate (23.26%) derived from matK sequences. In this study, we compared genic and intergenic regions of three Dioscorea chloroplast genomes and found that the density of SNPs and indels in intergenic sites was about twice and seven times higher than that of SNPs and indels in the genic regions, respectively. A total of 52 primer pairs covering highly variable regions were designed and seven pairs of primers had 80%–100% PCR success rate. PCR amplicons of 73 Dioscorea individuals and assembled sequences of 47 Dioscorea SRAs were used for estimating intraspecific and interspecific divergence for the seven loci: The rpoB‐trnC locus had the highest interspecific divergence. Automatic barcoding gap discovery (ABGD), Poisson tree processes (PTP), and generalized mixed Yule coalescence (GMYC) analysis were applied for species delimitation based on the seven loci and successfully identified the majority of species, except for species in the Enantiophyllum section. Phylogenetic analysis of 51 Dioscorea individuals (28 species) showed that most individuals belonging to the same species tended to cluster in the same group. Our results suggest that the variable loci derived from comparative analysis of plastid genome sequences could be good DNA barcode candidates for taxonomic analysis and species delimitation.