Genetic Polymorphisms of Pneumocystis Jirovecii in HIV-Positive and HIV-Negative Patients in Northern China

Pneumocystis jirovecii is an opportunistic fungus that can cause severe and potentially fatal Pneumocystis pneumonia (PCP) in immunodeficient patients. In this study, we investigated the genetic polymorphisms of P. jirovecii at eight different loci, including six nuclear genes (ITS, 26S rRNA, sod, dhps, dhfr and β-Tub) and two mitochondrial genes (mtLSU-rRNA and cyb) in three PCP cases, including two patients with HIV infection and one without HIV infection in Shanxi Province, P.R. China. The gene targets were amplified by PCR followed by sequencing of plasmid clones. The HIV-negative patient showed a coinfection with two genotypes of P. jirovecii at six of the eight loci sequenced. Of the two HIV-positive patients, one showed a coinfection with two genotypes of P. jirovecii at the same two of the six loci as in the HIV-negative patient, while the other showed a single infection at all eight loci sequenced. None of the three drug target genes (dhfr, dhps and cyb) showed mutations known to be potentially associated with drug resistance. This is the first report of genetic polymorphisms of P. jirovecii in PCP patients in Shanxi Province, China. Our findings expand our understanding of the genetic diversity of P. jirovecii in China. Open in a separate window     

piR-823 inhibits cell apoptosis via modulating mitophagy by binding to PINK1 in colorectal cancer

Mitophagy plays a vital role in the maintenance of mitochondrial homeostasis and tumorigenesis. Noncoding RNA piR-823 contributes to colorectal tumorigenesis. In this study, we aim to evaluate piR-823-mediated mitophagy and its mechanistic association with colorectal cancer (CRC). Digital gene expression analysis was performed to explore the potential functions of piR-823. A piR-823 antagomir (Ant-823) was used to inhibit piR-823 expression, and piR-823 mimics (mimics-823) were used to increase piR-823 expression. Mitophagy was measured in vivo and in vitro by immunofluorescence and western blot analysis. JC-1 staining, ATP production, real-time PCR, and western blot analysis were used to measure changes in mitochondrial quality and number. siRNA transfection was used to inhibit mitophagy, and CCCP was used to induce mitophagy. RNA pull-down assays and RNA-binding protein immunoprecipitation assays were conducted to investigate the molecular mechanisms. Here, we found that CRC cells transfected with Ant-823 presented an altered expression of autophagic and mitophagy genes by Digital gene expression analysis. Ant-823 could promote Parkin activation and mitophagy in vitro and in vivo, followed by mitochondrial loss and dysfunction of some mitochondria, whereas mimics-823 exerted the opposite effects in CRC cells. The inhibition of mitophagy by siParkin alleviated Ant-823-induced mitochondrial loss and dysfunction, as well as apoptosis to a certain extent. Furthermore, piR-823 was found to interact with PINK1 and promote its ubiquitination and proteasome-dependent degradation, thus alleviating mitophagy. Finally, these findings were verifed in samples obtained by patients affected by colorectal cancer. In conclusion, we identify a novel mechanism by which piR-823 regulates mitophagy during CRC tumorigenesis by increasing PINK1 degradation. Subject terms: Colorectal cancer, Gastrointestinal cancer     

淮河流域蒸散发时空变化与归因分析

蒸散发（Evapotranspiration,ET）是联结土壤-植被-大气过程的纽带,对理解地表水热平衡至关重要。因此,量化分析ET时空变化特征、揭示其主要控制因子对区域用水管理和农业生产十分重要。利用遥感数据和气象数据,基于BEPS模型估算了1981-2019年的淮河流域ET,分析了该区域ET时空分布特征,并通过敏感度系数和贡献率方法对该区域的ET多年变化特征进行了归因分析,最后借助数值实验方法深入探究影响特湿润年（2003年）ET较低的主要原因。结果表明：（1）1981-2019年淮河流域多年平均ET为549.83 mm,其中夏季ET占全年ET的比值达到47.63%;1981年以来区域ET整体呈极显著上升趋势（4.41 mm/a,P<0.01）;季节上,除冬季外,其他三个季节的ET增幅均呈显著性增加（P<0.05）,四季增幅速率大小依次为：夏季>春季>秋季>冬季;空间上,中东部和南部ET较高,重心模型显示ET高值区域呈显著的由北向南的移动趋势;（2）归因分析结果表明,淮河流域ET对气温变化最敏感,其次为相对湿度、太阳总辐射、叶面积指数（LAI）和降水,但ET对LAI的正敏感性逐渐增强导致LAI的显著升高对流域ET年际变化贡献最大（44.5%）,其次是气温的升高（25.93%）;同时,LAI是春、夏、秋三季ET变化的主导因素,气温是冬季ET变化的主导因素;（3）数值实验显示高相对湿度是引起特湿润年（2003年）ET明显偏低的最主要因素,这与导致长时间序列ET变化的原因不同。因此,建议今后加强极端气候条件下ET变化的归因分析,为更有效地应对全球气候变化提供决策服务。研究结果能够为认识淮河流域环境变化对水循环影响及合理分配区域水资源提供科学参考。     

茄子果实相关农艺性状全基因组关联分析研究进展与展望

茄子是重要的园艺作物,也是茄科植物中种植最广泛的蔬菜之一。茄子果实相关农艺性状是一种复杂的数量性状,传统育种选育效率低、周期长。高通量测序技术与生物信息学技术的快速发展,使得全基因组关联分析(genome-wide association study, GWAS)在解析茄子果实相关复杂农艺性状的遗传规律方面展现出巨大的应用前景。本文对全基因组关联分析在茄子的果形、果色等果实相关农艺性状中的研究进展进行了综述;针对茄子数量性状遗传研究中普遍存在的“丢失遗传力”(missing heritability)问题,从4个GWAS策略在茄子果实相关农艺性状研究中的应用热点出发,提出了未来茄子GWAS的发展对策;并结合当前茄子遗传改良的实践需求,展望了GWAS策略在茄子分子育种领域的广阔应用前景。本文为今后利用GWAS解析各种茄子果实相关性状的遗传基础以及选育符合消费者需求的果实材料提供了理论依据和参考。     

一株耐硒壶瓶碎米荠内生菌分离、鉴定及其体外硒代谢研究

【背景】壶瓶碎米荠对硒具有超积累能力,并主要以硒代胱氨酸的形式存在,与已有的硒超积累植物显著不同,其硒超积累机制不明。【目的】从硒超积累植物壶瓶碎米荠(Cardamine hupingshanensis)体内分离耐硒内生菌,并对其进行鉴定和体外硒代谢特征研究,为壶瓶碎米荠超积累硒的机制研究提供参考。【方法】从壶瓶碎米荠新鲜叶片中分离纯化耐硒内生菌株,对其进行生理生化特征及16S rRNA基因序列分析鉴定,并对其进行亚硒酸钠培养代谢。【结果】获得一株耐硒内生菌CSN-1,被鉴定为甲基营养型芽孢杆菌(Bacillus methylotrophicus),培养液中硒含量低(Se 1.5 mg/L)时其吸光度值较对照组高,硒含量高(Se 10 mg/L)时其吸光度值较对照组低;代谢后的上清液中硒主要以Se~(4+)存在,而菌体中硒主要是硒代胱氨酸(SeCys_2)。【结论】硒超积累植物壶瓶碎米荠叶片体内存在甲基营养型芽孢杆菌(Bacillus methylotrophicus)CSN-1,具有将亚硒酸钠转化为硒代胱氨酸的能力,低浓度的硒对该内生菌的生长具有一定的促进作用,而高浓度的硒则会抑制该内生菌的生长。     

An approximate stochastic optimal control framework to simulate nonlinear neuro-musculoskeletal models in the presence of noise

Optimal control simulations have shown that both musculoskeletal dynamics and physiological noise are important determinants of movement. However, due to the limited efficiency of available computational tools, deterministic simulations of movement focus on accurately modelling the musculoskeletal system while neglecting physiological noise, and stochastic simulations account for noise while simplifying the dynamics. We took advantage of recent approaches where stochastic optimal control problems are approximated using deterministic optimal control problems, which can be solved efficiently using direct collocation. We were thus able to extend predictions of stochastic optimal control as a theory of motor coordination to include muscle coordination and movement patterns emerging from non-linear musculoskeletal dynamics. In stochastic optimal control simulations of human standing balance, we demonstrated that the inclusion of muscle dynamics can predict muscle co-contraction as minimal effort strategy that complements sensorimotor feedback control in the presence of sensory noise. In simulations of reaching, we demonstrated that nonlinear multi-segment musculoskeletal dynamics enables complex perturbed and unperturbed reach trajectories under a variety of task conditions to be predicted. In both behaviors, we demonstrated how interactions between task constraint, sensory noise, and the intrinsic properties of muscle influence optimal muscle coordination patterns, including muscle co-contraction, and the resulting movement trajectories. Our approach enables a true minimum effort solution to be identified as task constraints, such as movement accuracy, can be explicitly imposed, rather than being approximated using penalty terms in the cost function. Our approximate stochastic optimal control framework predicts complex features, not captured by previous simulation approaches, providing a generalizable and valuable tool to study how musculoskeletal dynamics and physiological noise may alter neural control of movement in both healthy and pathological movements.     

从宏基因组学切入探讨老年性阴道炎阴道微生态的微观整体性

老年性阴道炎是女性绝经后的常见病、多发病,西医认为该病的病因为绝经后或长期闭经后雌激素水平降低,阴道微生态失衡。宏基因组学是近年出现的菌群整体性检测方法,采用宏基因组学技术检测老年性阴道的微观整体状况,将为本病中医证型及疗效评定提供客观精确的量化标准。     

苦豆子提取物与埃玛菌素混用对小菜蛾生长发育和繁殖的影响

将苦豆子甲醇和水提取物分别与埃玛菌素混合,在室内测定了两混合物对小菜蛾生长发育和繁殖的影响.结果表明:苦豆子甲醇提取物 埃玛菌素和苦豆子水提取物 埃玛菌素对小菜蛾3龄幼虫口服毒力明显高于埃玛菌素,其LC50值分别为0.19、0.32和0.51 mg.L-1;用两混合物以及埃玛菌素亚致死剂量处理3龄幼虫,试虫化蛹率、羽化率和成虫的繁殖力均呈现明显不良影响.     

江苏省区域农业生态经济的时空变异分析

以江苏省徐连、沿海、宁镇扬、沿江和太湖5个经济区及其9个代表县市区域为研究对象,基于"社会-生态-经济"的系统分析,建立了包括目标层、准则层和指标层3个层次多指标的农业生态经济综合评价指标体系,采用主成分分析方法对评价指标体系进行检验、筛选,并以江苏省为案例,综合分析了农业生态经济系统的时空变异特征。结果表明:江苏省农业生态经济发展水平的时空变异明显,空间上,徐连、沿海、宁镇扬、沿江和太湖5个经济区表现出由北向南逐渐上升的趋势,且随时间的推移逐渐上升;时间上,徐连和太湖经济区农业生态经济发展水平在1999—2008年间呈持续上升,处于良好或优质协调状态。虽然两经济区的农业生态环境-经济发展协调发展水平均较高,但差距较大,徐连和太湖经济区的农业生态环境-经济发展协调度从1999年到2008年呈逐渐下降趋势,但总体上仍处于良好或优质协调状态。