RT—PCR法检测大鼠脑组织及C6细胞中β—APP的表达

β-淀粉样蛋白(β-AP)是阿尔茨海默氏病(Alzheimer’s disease)病人老年斑的主要成分,它是β-淀粉样前体蛋白(β-APP)剪切后的产物。β-APP基因在体内存在β-APP_(695),β-APP_(751)β-APP_(770)。等几种主要的转录物,它们的区别在于Kunize丝氨酸蛋白酶抑制区(KDI)编码序列的存在和缺失。通过RT-PCR技术,用针对KPI编码区两侧序列的一种特异性引物可由总RNA样品中扩增出反映以上三种转录物的cDNA片段。实验表明,胎鼠脑组织中未检测到β-APPmRNA;6月龄大鼠海马组织,大脑皮层中只检测到β-APP_(695);在神经胶质瘤细胞系C6中存在β-APP_(695),β-APP_(751),β-APP_(770),其中β-APP_(770)占优势。     

白念珠菌钙稳态系统及钙信号途径的研究进展

白念珠菌是临床重要的条件致病菌,其胞内的钙稳态及钙信号途径与宿主侵染、压力应答等诸多生理过程紧密相关。研究该菌的钙稳态系统及钙信号调控网络,对明确白念珠菌的侵染机制与耐药机理,以及开发具有新靶点的抗真菌药物具有重要意义。本文对这些内容的研究进展进行了综述。     

猪肥胖基因5'调控区与内含子1的测序分析及其两个新微卫星的发现

根据猪肥胖基因(Obese gene,Ob)部分序列设计引物,并通过Southern杂交和杂交阳性片段的克隆进行测序,首次得到猪Ob基因内含子1和5'调控区16.4 kb序列,将外显子1定位在起始密码子上游11.1 kb处,同时在内含子1中发现了两个新的微卫星,命名为SW200和SW160.调控区潜在的调控元件分析显示,-1～ -300 bp区间包含了C/EBP和两个Sp1,可能更直接高效的调节其转录.为研究SW200和SW160与一些重要经济性状的关系,分析了等位基因和基因型频率,用SAS8.2软件分析显示,两个微卫星多态仅对二花脸猪的头胎总产仔数有显著的效应.     

Biological role of MicroRNA-103 based on expression profile and target genes analysis in pigs

MicroRNAs (miRNAs) are endogenously expressed RNAs consisting of 20–24 nucleotides. These molecules are thought to repress protein translation by binding to target mRNAs. However, biological functions have not been assigned to most of the 175 porcine miRNAs registered in miRBase (release 15.0). In an effort to uncover miR-103 important in pigs, we examined the integrative tissue expression profile and gene ontology (GO) term enrichment of predicted target genes to determine the global biological functions of miR-103. Our results demonstrated that miR-103 is involved in various biological processes including brain development, lipid metabolism, adipocyte differentiation, hematopoiesis, and immunity. Moreover, we also experimentally verified effects of miR-103 in porcine preadipocytes. miR-103 levels increased in differentiating adipocytes, and inhibition of miR-103 effectively inhibited preadipocyte differentiation. In addition, mRNA levels of the putative miR-103 target RAI14 were higher in miR-103 inhibitor-treated adipocytes. These results demonstrate that miR-103 is involved in porcine preadipocyte differentiation and may act through the putative target gene RAI14. In a word, our data provide new insights into the global biological role of miR-103.     

酵母双杂交系统的发展及其衍生系统的比较

酵母双杂交及其衍生系统是鉴定及分析蛋白质-蛋白质、蛋白质-DNA、蛋白质-RNA相互作用的最常用、最有效的工具之一。本文系统介绍了该技术的背景、发展过程,以及由Fields和Song初次描述的由酵母双杂交系统衍生而来的几种主要的双杂交系统的特点,并简要比较了各系统的优缺点。     

植物肌醇半乳糖苷合酶的生理功能和调控机制

植物肌醇半乳糖苷合酶（galactinol synthase, GolS）是高等植物棉子糖类寡糖合成途径中的关键酶,为棉子糖系列寡糖提供活化的半乳糖基,调控植物体内棉子糖（raffinose, RFO）系列寡糖的生物合成与积累。编码该酶的基因属于糖基转移酶（glycosyltransferases, GTs）GT8基因家族的亚家族。GolS参与合成的最终产物棉子糖家族低聚糖（raffinose family oligosaccharides,RFOs）是植物中重要的碳水化合物存在形式,在细胞内可溶性强,可作为脱水保护剂;还能发挥稳定膜结构的作用。同时,GolS催化合成的直接产物肌醇半乳糖苷（galactinol）和RFOs都能作为羟基自由基捕获分子参与活性氧的清除。因此,GolS参与的代谢途径在植物碳同化物的贮存与运输、生物和非生物逆境响应、种子的脱水效应等生命过程中均发挥了重要作用。GolS基因结构差异与表达模式不同,导致不同GolS基因参与的生物学功能具有很大的差异。研究植物中不同GolS基因的结构特征,组织特异性表达特性及它们响应不同生长发育阶段、环境变化的表达特性,对了解GolS参与的生物学功能具有重要意义。同时,在分子生物学水平上,深入了解调控植物GolS基因的分子调控机制,为通过遗传工程或分子辅助育种等手段,利用GolS改良农林作物的经济性状提供理论支持。本文针对近年来植物中GolS基因的生理功能和调控机制的研究进行了综述。     

On preprocessing and antisymmetry in de novo peptide sequencing: improving efficiency and accuracy

Peptide sequencing plays a fundamental role in proteomics. Tandem mass spectrometry, being sensitive and efficient, is one of the most commonly used techniques in peptide sequencing. Many computational models and algorithms have been developed for peptide sequencing using tandem mass spectrometry. In this paper, we investigate general issues in de novo sequencing, and present results that can be used to improve current de novo sequencing algorithms. We propose a general preprocessing scheme that performs binning, pseudo-peak introduction, and noise removal, and present theoretical and experimental analyses on each of the components. Then, we study the antisymmetry problem and current assumptions related to it, and propose a more realistic way to handle the antisymmetry problem based on analysis of some datasets. We integrate our findings on preprocessing and the antisymmetry problem with some current models for peptide sequencing. Experimental results show that our findings help to improve accuracies for de novo sequencing.     

Prioritizing human cancer microRNAs based on genes' functional consistency between microRNA and cancer

The identification of human cancer-related microRNAs (miRNAs) is important for cancer biology research. Although several identification methods have achieved remarkable success, they have overlooked the functional information associated with miRNAs. We present a computational framework that can be used to prioritize human cancer miRNAs by measuring the association between cancer and miRNAs based on the functional consistency score (FCS) of the miRNA target genes and the cancer-related genes. This approach proved successful in identifying the validated cancer miRNAs for 11 common human cancers with area under ROC curve (AUC) ranging from 71.15% to 96.36%. The FCS method had a significant advantage over miRNA differential expression analysis when identifying cancer-related miRNAs with a fine regulatory mechanism, such as miR-27a in colorectal cancer. Furthermore, a case study examining thyroid cancer showed that the FCS method can uncover novel cancer-related miRNAs such as miR-27a/b, which were showed significantly upregulated in thyroid cancer samples by qRT-PCR analysis. Our method can be used on a web-based server, CMP (cancer miRNA prioritization) and is freely accessible at http://bioinfo.hrbmu.edu.cn/CMP. This time- and cost-effective computational framework can be a valuable complement to experimental studies and can assist with future studies of miRNA involvement in the pathogenesis of cancers.     

停乳链球菌isp基因的克隆与原核表达

根据GenBank报道的停乳链球菌(Streptococcus dysgalactiae)isp基因(GenBank:CP002215.1)序列设计引物,PCR扩增得到isp基因。片段大小为1 500 bp,与从GenBank下载的序列进行同源性比对结果为98.57%。将isp基因克隆于表达载体pET-25b,成功构建了重组质粒pET-25b-isp,将重组质粒分别转化BL21(DE3),将BL21(pET-25b-isp)阳性重组菌株经IPTG诱导后,SDS-PAGE结果显示均有蛋白表达,大小分别为53 ku与目的蛋白大小相符;Western blot检测显示,表达的蛋白为目的蛋白。对成功构建的菌株BL21(pET-25b-isp)表达条件经优化后,在温度37℃,诱导时间12 h,IPTG浓度为1 mmol/L时,蛋白有较高的表达量。