DNA末端硫修饰依赖的体外大片段DNA连接法

【背景】DNA组装技术是基因组合成中的一个关键技术。探索低成本、高效率的基因组合成技术一直是合成生物学的重要研究领域。在某些细菌如变铅青链霉菌中,DNA上有磷硫酰化修饰(简称硫修饰),而在另一些细菌如天蓝色链霉菌中存在一种含有硫修饰识别结构域(sulfur-binding domain, SBD)的识别蛋白,可以特异性识别DNA上的硫修饰,这启发了我们发展出一种新的DNA组装技术。【目的】探究在DNA末端硫修饰的连接中,T4 DNA连接酶与SBD相融合蛋白和单独的T4 DNA连接酶相比,是否有更高的连接效率。【方法】根据同源重组原理,设计硫修饰引物,扩增硫修饰的DNA片段。构建T4 DNA连接酶与SBD融合蛋白的3种表达载体T4-linker-SBD(Hga)、T4-linker-SBD(Spr)和T4-linker-SBD(Mmo),表达纯化以上3种融合蛋白。比较3组浓度梯度(2.4、0.24、0.024 mg/mL) T4 DNA连接酶与融合蛋白在2.5 kb和8.0 kb DNA片段连接上的差异。【结果】DNA末端硫修饰的2.5kb和8.0kb的两端片段均能扩增,而且3种融合蛋白...     

珍稀濒危植物蒜头果种子萌发特征与幼苗类型的研究

以去除果皮后阴干的珍稀濒危植物蒜头果种子为材料,在温室大棚沙池内进行层积处理,从层积处理开始至子叶出土的不同萌发阶段,考察蒜头果种子发育形态、贮藏物质积累、酶活性以及幼苗类型等变化特征,初步探讨其种子休眠形成原因。结果显示：(1)蒜头果种子从解除休眠开始至萌发形成幼苗的过程约需195 d,其中幼胚的形态发育后熟约需75 d,随后30 d内是种子集中萌发的时期,其发芽率达到最高(53.33%);依据种胚发育形态的标志特征将此过程划分为7个阶段(S1～S7阶段):S1阶段种子未萌发,S2阶段种胚“露白”,S3阶段胚根突破种皮长超过1 cm, S4阶段下胚轴与胚根连接处形成弯钩结构,S5阶段“S”型胚形成及胚根前端膨大,S6阶段种子不仅具有膨大的胚根且已有侧根的分化,S7阶段子叶脱落,胚芽出土,真叶出现。(2)蒜头果种子在湿沙层积过程中,种胚胚长和胚率从S1阶段的(5.49±1.57)mm和(19.48±5.72)%分别增加至S6阶段的(67.92±2.94)mm和(240.75±15.29)%,胚率平均增加了12.4倍,显示蒜头果种子的胚需要经历后熟过程才能萌发,属于胚后熟型种子。(3)从...     

‘凤丹’牡丹PoKAS基因的克隆及表达分析

为探究‘凤丹’牡丹(Paeonia ostii‘Feng Dan’)PoKAS基因在脂肪酸合成中的功能,从转录组数据中获得3个PoKAS基因,克隆基因全长并进行生物信息学分析,通过qRT-PCR检测它们在牡丹落花后第23、45、75、100和125天时的表达。结果显示：(1)克隆得到的3个基因序列全长分别为1 401、1 692和1 215 bp,分别编码466、563和404 aa;保守结构域分析发现,它们都含有KAS保守结构域,属于cond-enzymes超蛋白家族。(2)系统进化树将三者分为三大类,表明其在进化上相对独立,分别命名为PoKASⅠ、PoKASⅡ和PoKASⅢ(GenBank登录号分别为OP056413、OP056412和OP056414)。(3)qRT-PCR分析发现,在牡丹落花后种子发育的5个时期中,PoKASⅠ和PoKASⅡ基因在落花后75 d和45 d时的表达量分别显著高于其他发育时期;PoKASⅢ基因在落花后45～125 d时的表达量均显著高于落花后23 d,说明PoKASⅢ基因在牡丹种子脂肪酸合成的整个过程中发挥着重要作用,而PoKASⅡ基因主要在种子油脂...     

Steel Anti-Corrosion Strategy Enables Long-Cycle Zn Anode

The progress of aqueous zinc batteries (AZBs) is limited by the poor cycling life due to Zn anode instability, including dendrite growth, surface corrosion, and passivation. Inspired by the anti-corrosion strategy of steel industry, a compounding corrosion inhibitor (CCI) is employed as the electrolyte additive for Zn metal anode protection. It is shown that CCI can spontaneously generate a uniform and ≈30 nm thick solid-electrolyte interphase (SEI) layer on Zn anode with a strong adhesion via Zn O bonding. This SEI layer efficiently prohibits water corrosion and guides homogeneous Zn deposition without obvious dendrite formation. This enables reversible Zn deposition and dissolution for over 1100 h under the condition of 1 mA cm⁻² and 1 mAh cm⁻² in symmetric cells. The Zn-MnO₂ full cells with CCI-modified electrolyte deliver an ultralow capacity decay rate (0.013% per cycle) at 0.5 A g⁻¹ over 1000 cycles. Such an innovative strategy paves a low-cost way to achieve AZBs with long lifespan.     

Transmembrane kinase 1-mediated auxin signal regulates membrane-associated clathrin in Arabidopsis roots

Clathrin-mediated endocytosis (CME) is the major endocytic pathway in eukaryotic cells that directly regulates abundance of plasma membrane proteins. Clathrin triskelia are composed of clathrin heavy chains (CHCs) and light chains (CLCs), and the phytohormone auxin differentially regulates membrane-associated CLCs and CHCs, modulating the endocytosis and therefore the distribution of auxin efflux transporter PIN-FORMED2 (PIN2). However, the molecular mechanisms by which auxin regulates clathrin are still poorly understood. Transmembrane kinase (TMKs) family proteins are considered to contribute to auxin signaling and plant development; it remains unclear whether they are involved in PIN transport by CME. We assessed TMKs involvement in the regulation of clathrin by auxin, using genetic, pharmacological, and cytological approaches including live-cell imaging and immunofluorescence. In tmk1 mutant seedlings, auxin failed to rapidly regulate abundance of both CHC and CLC and to inhibit PIN2 endocytosis, leading to an impaired asymmetric distribution of PIN2 and therefore auxin. Furthermore, TMK3 and TMK4 were shown not to be involved in regulation of clathrin by auxin. In summary, TMK1 is essential for auxin-regulated clathrin recruitment and CME. TMK1 therefore plays a critical role in the establishment of an asymmetric distribution of PIN2 and an auxin gradient during root gravitropism.     

Genomic analyses reveal natural selection on reproduction related genes between two closely related Populus (Salicaceae) species

Identifying the factors that cause reproductive isolation and their relative importance in species divergence is crucial to our understanding of speciation processes. In most species, natural selection is commonly considered to play a large role in driving speciation. Based on whole genome re-sequencing data from 27 Populus alba and 28 Populus adenopoda individuals, we explored the factors related to reproductive isolation of these two closely related species. The results showed that the two species diverged ~5–10 million years ago (Ma), when the Qinghai–Tibet Plateau reached a certain height and the inland climate of the Asian continent became arid. In highly differentiated genomic regions, the relative divergence (F_ST) and absolute divergence (d_xy) were significantly higher than the genomic background, θπ and shared polymorphisms decreased whereas fixed differences increased, which indicated that natural selection played a key role in the reproductive isolation of the two species. In addition, we found several genes that were related to reproduction that may be involved in explaining the reproductive isolation. Using phylogenetic trees resolved from haplotype data of Populus tomentosa and P. adenopoda, the maternal origin of P. tomentosa from P. adenopoda was likely to be located in Hubei and Chongqing Provinces.     

SEQUENCES OF LLANDOVERIAN CHITINOZOANS IN YANGZl REGION

This paper is dedicated as a token of homage and gratitude to Prof. Mu. En-zhi, the nestor in the field of graptolite studies, who introduced us chitinozoan studies with constant supports in many ways, and who died on 8th April, 1987. The Palaeontological Society of China has decided to publish a specieal volume in memory of this outstanding scientist.     

Poplar (Populus nigra L.) plants transformed with aBacillus thuringiensis toxin gene: insecticidal activity and genomic analysis

Insect-resistant poplar (Populus nigra L.) plants have been produced by infecting leaves withAgrobacterium tumefaciens strains carrying a binary vector containing different truncated forms of aBacillus thuringiensis (B.t.) toxin gene under a duplicated CaMV 35S promoter. Putative transgenic plants were propagated by cuttings at two experimental farms (in Beijing and Xinjiang, China). At 2–3 years after transformation, 17 of them were selected on the bases of insect-tolerance and good silvicultural traits, and evaluated for insect resistance, for the presence of theB.t. toxin DNA fragment (Southern blots and PCR) and for the expression of the transgene (western and northern blots). Somaclonal variation, as suggested by the appearance of permanent changes in the shape of the leaves, was also investigated with molecular tools (RFLP (restriction fragment length polymorphism), RAPD (random amplified polymorphic DNA) and microsatellite DNA).Bioassays withApochemia cineraius andLymantria dispar on the leaves of the selected clones showed different and, in some cases, high levels of insecticidal activity. The molecular analysis demonstrated integration and expression of the foreign gene. Somatic changes were correlated to extensive genomic changes and were quantified in dendrograms, in terms of genomic similarity. The analysis of control plants suggested that genomic changes were correlated to thein vitro culture step necessary forA. tumefaciens-mediated gene transfer, rather than to the integration of the foreign genes.Three transgenic clones (12, 153 and 192), selected for insect resistance, reduced morphological changes and promising silvicultural traits, are now under large-scale field evaluation in six different provinces in China.