Sequestration by IFIT1 Impairs Translation of 2′O-unmethylated Capped RNA

Viruses that generate capped RNA lacking 2′O methylation on the first ribose are severely affected by the antiviral activity of Type I interferons. We used proteome-wide affinity purification coupled to mass spectrometry to identify human and mouse proteins specifically binding to capped RNA with different methylation states. This analysis, complemented with functional validation experiments, revealed that IFIT1 is the sole interferon-induced protein displaying higher affinity for unmethylated than for methylated capped RNA. IFIT1 tethers a species-specific protein complex consisting of other IFITs to RNA. Pulsed stable isotope labelling with amino acids in cell culture coupled to mass spectrometry as well as in vitro competition assays indicate that IFIT1 sequesters 2′O-unmethylated capped RNA and thereby impairs binding of eukaryotic translation initiation factors to 2′O-unmethylated RNA template, which results in inhibition of translation. The specificity of IFIT1 for 2′O-unmethylated RNA serves as potent antiviral mechanism against viruses lacking 2′O-methyltransferase activity and at the same time allows unperturbed progression of the antiviral program in infected cells.     

Predicting the spatial distribution of the blue-spotted maskray Neotrygon kuhlii (Myliobatiformes, Dasyatidae) on the Australian North and Northwest Shelf comparing two different methods of habitat modeling

Knowledge about distribution and habitat requirements of species is important for analyzing their role in marine ecosystems or establishing sanctuaries. However, knowledge is scarce especially in many chondrichthyan species. In this study, the spatial distribution of the stingray Neotrygon kuhlii on the Australian North and Northwest Shelf was predicted model-based for the first time. Predictions based on two different types of habitat suitability models, logistic regression and maximum entropy modeling. Catch data of N. kuhlii from Australian trawl surveys combined with randomly selected pseudo-absences were used for modeling together with data sets of several environmental variables. Both modeling methods yielded plausible and validated habitat suitability models containing water depth and salinity as significant independent variables. The model-based predictions of the probability of occurrence of N. kuhlii were similar for both methods and thus emphasized the goodness of the models. Following the predictions, N. kuhlii has its highest probability of occurrence in about 60 m water depth and at a salinity of about 35 PSU. The results indicate that both modeling methods are powerful tools to predict spatial distribution and habitat quality for marine fish species. Therefore, they are suitable for detecting possible distribution in areas with only few field records.     

Spider (Araneus diadematus) cocoon silk: a case of non-periodic lattice crystals with a twist?

Transmission electron microscopy was used to investigate the supramolecular structure of Araneus diadematus (garden spider) cocoon silk. Electron diffraction patterns contain features which are consistent with the presence of non-periodic lattice crystals, i.e. highly frustrated crystalline regions as identified previously in the major ampullate silk (MAS, dragline) of Nephila clavipes spiders. The diffraction patterns further suggest that crystals in A. diadematus cocoon silk may be twisted parallel to the chain direction, offering a potential explanation for the lower tensile stiffness of this fibre relative to MAS.     

An example for black shale development on a carbonate platform (late Triassic, Seefeld, Austria)

Summary East of Seefeld/Tyrol the Hauptdolomit facies (Triassic, Norian) is accompanied by an organic-rich intercalation, the Seefeld facies. Three facies were distinguished, which developed within a separate basin within the Hauptdolomit carbonate platform. These facies have been investigated in an environmental and palaeoecological context applying microfacies analysis, palynology, organic petrology, organic geochemistry and stable isotope geochemistry. As the controlling factors of sedimentation, sea level changes are suggested for large scale fluctuations, and climatic changes for variations on a smaller scale. Within the basin facies a μm-scaled rhythm can be observed, which was obviously seasonally controlled. Amajor amount of organic material of the deposit has been produced by microbial activity under anoxic conditions. Causes for the absence of pollen and spores in many black shale deposits are discussed.     

Membrane transport in stomatal guard cells: The importance of voltage control

Potassium uptake and export in the resting conditions and in response to the phytohormone abscisic acid (ABA) were examined under voltage clamp in guard cells of Vicia faba L. In 0.1 mM external K+ (with 5 mM Ca2(+)-HEPES, pH 7.4) two distinct transport states could be identified based on the distribution of the free-running membrane voltage (VM) data in conjunction with the respective I-V and G-V relations. One state was dominated by passive diffusion (mean VM = -143 +/- 4 mV), the other (mean VM = -237 +/- 10 mV) exhibited an appreciable background of primary H+ transport activity. In the presence of pump activity the free-running membrane voltage was negative of the respective K+ equilibrium potential (EK+), in 3 and 10 mM external K+. In these cases VM was also negative of the activation voltage for the inward rectifying K+ current, thus creating a strong bias for passive K+ uptake through inward-rectifying K+ channels. In contrast, when pump activity was absent VM was situated positive of EK+ and cells revealed a bias for K+ efflux. Occasionally spontaneous voltage transitions were observed during which cells switched between the two states. Rapid depolarizations were induced in cells with significant pump activity upon adding 10 microM ABA to the medium. These depolarizations activated current through outward-rectifying K+ channels which was further amplified in ABA by a rise in the ensemble channel conductance. Current-voltage characteristics recorded before and during ABA treatments revealed concerted modulations in current passage through at least four distinct transport processes, results directly comparable to one previous study (Blatt, M.R., 1990, Planta 180:445) carried out with guard cells lacking detectable primary pump activity. Comparative analyses of guard cells in each case are consistent with depolarizations resulting from the activation of an inward-going, as yet unidentified current, rather than an ABA-induced fall in H(+)-ATPase output. Also observed in a number of cells was an inward-directed current which activated in ABA over a narrow range of voltages positive of -150 mV; this and additional features of the current suggest that it may reflect the ABA-dependent activation of an anion channel previously characterized in Vicia guard cell protoplasts, but rule out its function as the primary mechanism for initial depolarization.(ABSTRACT TRUNCATED AT 400 WORDS)     

Metabolic activities of isolated akinetes of the cyanobacterium Nostoc spongiaeforme.

Intact akinetes (spores) of the cyanobacterium Nostoc spongiaeforme can be isolated free of vegetative cells and heterocysts. The akinetes remain viable for at least 2 weeks in distilled water. They do not germinate in water but do so readily when transferred subsequently to cyanobacterial growth medium. Isolated, nongerminating akinetes incorporated 35S from Na235SO4 into protein and lipid. Similar incorporation was observed when akinetes were isolated from old cultures (containing primarily akinetes) which were labeled with Na235SO4 for 4 to 5 h before isolation. The metabolic activities of isolated akinetes were therefore not a factitious response to the isolation procedure. Autoradiographs of radioactive akinetes showed that 35S was incorporated by virtually all akinetes, rather than by a small subpopulation of active cells. Akinetes consumed O2 in the dark and, in a dichlorophenyl dimethylurea-sensitive reaction, evolved O2 in the light. We conclude that akinetes are metabolically active under conditions in which germination does not occur.