The archaeal transamidosome for RNA-dependent glutamine biosynthesis

Archaea make glutaminyl-tRNA (Gln-tRNA^Gln) in a two-step process; a non-discriminating glutamyl-tRNA synthetase (ND-GluRS) forms Glu-tRNA^Gln, while the heterodimeric amidotransferase GatDE converts this mischarged tRNA to Gln-tRNA^Gln. Many prokaryotes synthesize asparaginyl-tRNA (Asn-tRNA^Asn) in a similar manner using a non-discriminating aspartyl-tRNA synthetase (ND-AspRS) and the heterotrimeric amidotransferase GatCAB. The transamidosome, a complex of tRNA synthetase, amidotransferase and tRNA, was first described for the latter system in Thermus thermophilus [Bailly, M., Blaise, M., Lorber, B., Becker, H.D. and Kern, D. (2007) The transamidosome: a dynamic ribonucleoprotein particle dedicated to prokaryotic tRNA-dependent asparagine biosynthesis. Mol. Cell, 28, 228–239.]. Here, we show a similar complex for Gln-tRNA^Gln formation in Methanothermobacter thermautotrophicus that allows the mischarged Glu-tRNA^Gln made by the tRNA synthetase to be channeled to the amidotransferase. The association of archaeal ND-GluRS with GatDE (K_D = 100 ± 22 nM) sequesters the tRNA synthetase for Gln-tRNA^Gln formation, with GatDE reducing the affinity of ND-GluRS for tRNA^Glu by at least 13-fold. Unlike the T. thermophilus transamidosome, the archaeal complex does not require tRNA for its formation, is not stable through product (Gln-tRNA^Gln) formation, and has no major effect on the kinetics of tRNA^Gln glutamylation nor transamidation. The differences between the two transamidosomes may be a consequence of the fact that ND-GluRS is a class I aminoacyl-tRNA synthetase, while ND-AspRS belongs to the class II family.     

Representing Representation: Integration between the Temporal Lobe and the Posterior Cingulate Influences the Content and Form of Spontaneous Thought

When not engaged in the moment, we often spontaneously represent people, places and events that are not present in the environment. Although this capacity has been linked to the default mode network (DMN), it remains unclear how interactions between the nodes of this network give rise to particular mental experiences during spontaneous thought. One hypothesis is that the core of the DMN integrates information from medial and lateral temporal lobe memory systems, which represent different aspects of knowledge. Individual differences in the connectivity between temporal lobe regions and the default mode network core would then predict differences in the content and form of people’s spontaneous thoughts. This study tested this hypothesis by examining the relationship between seed-based functional connectivity and the contents of spontaneous thought recorded in a laboratory study several days later. Variations in connectivity from both medial and lateral temporal lobe regions was associated with different patterns of spontaneous thought and these effects converged on an overlapping region in the posterior cingulate cortex. We propose that the posterior core of the DMN acts as a representational hub that integrates information represented in medial and lateral temporal lobe and this process is important in determining the content and form of spontaneous thought.     

Metal (Fe, Zn, Cu, Pb and Cd) concentration patterns in components of a macrophyte-based coastal lagoon ecosystem

Information on the metal biological fate in macrophyte-based coastal lagoons is provided; this information can contribute to the assessment of the environmental effects of metal pollution and to the development of predictive models for rational management of coastal lagoons. Iron, Zn, Cu, Pb and Cd concentrations in the dominant invertebrate and fish species of Monolimni Lagoon, Mediterranean Sea, as well as in potential major sources for metal accumulation in these animals (water, sediments, angiosperms, seaweeds), were measured. Principal Component Analysis (PCA) was conducted using metal concentrations in invertebrates and fishes. All five metal concentrations loaded significantly on the first PCA axis; however, Zn and Cu loadings were less significant than Cd and even less than Fe and Pb ones. The samples of deposit-feeding invertebrates were separated from those of the rest of the organisms (browsing, herbivorous and carnivorous invertebrates, carnivorous gobies and muscle tissues of detritivorous mullets) along the first PCA axis. Deposit-feeding invertebrates displayed the highest Fe and Pb contents, and in general, the highest or comparatively high Cd, Zn and Cu ones. Carnivorous gobies showed comparatively high Zn contents and carnivorous shrimps the highest Cu ones, while muscle tissues of detritivorous mullets had low metal loads. In addition, there was no essential increase in metal concentrations corresponding to the increasing trophic level (autotrophs, to herbivores, to carnivores). Our findings suggest that (a) the variability in Fe, Pb and Cd contents in invertebrates and gobies depends at least to some extent on interspecific differences in feeding habits—deposit feeders accumulated the highest metal amounts probably due to high rates of uptake from sediments, (b) the variability in Zn and Cu concentrations in these organisms depends also on other interspecific differences apart from those in feeding habits, (c) metal accumulation in mullet muscle tissues does not depend markedly on feeding habits and (d) the trophic transfer of macrophyte-bound metals to the coastal lagoon food web is of relatively minor importance.