Soil carbon saturation: concept,evidence and evaluation

Current estimates of soil C storage potential are based on models or factors that assume linearity between C input levels and C stocks at steady-state, implying that SOC stocks could increase without limit as C input levels increase. However, some soils show little or no increase in steady-state SOC stock with increasing C input levels suggesting that SOC can become saturated with respect to C input. We used long-term field experiment data to assess alternative hypotheses of soil carbon storage by three simple models: a linear model (no saturation), a one-pool whole-soil C saturation model, and a two-pool mixed model with C saturation of a single C pool, but not the whole soil. The one-pool C saturation model best fit the combined data from 14 sites, four individual sites were best-fit with the linear model, and no sites were best fit by the mixed model. These results indicate that existing agricultural field experiments generally have too small a range in C input levels to show saturation behavior, and verify the accepted linear relationship between soil C and C input used to model SOM dynamics. However, all sites combined and the site with the widest range in C input levels were best fit with the C-saturation model. Nevertheless, the same site produced distinct effective stabilization capacity curves rather than an absolute C saturation level. We conclude that the saturation of soil C does occur and therefore the greatest efficiency in soil C sequestration will be in soils further from C saturation.

Trichome micromorphology in <Emphasis Type="Italic">Teucrium</Emphasis> (Lamiaceae) species growing in Croatia

Micromorphological investigation of the types, dimensions and distribution of characteristic trichomes in leaves and stems in Teucrium L. species (T. arduini L., T. chamaedrys L., T. flavum L., T. montanum L., T. polium L., and T. scordium L. subsp. scordioides Schreb.) distributed in Croatia was carried out as part of the taxonomical study of the genus Teucrium. Secretory types of hairs, peltate and capitate hairs were observed on the epidermis of stems and leaves of all investigated species. Non-secretory, acicular hairs were almost completely lacking on stems of T. scordium subsp. scordioides. Flagelliform hairs were not found in T. flavum and T. polium. Cladose hairs were present only in T. polium. The largest micromorphological variability was established between wild and cultivated samples of T. arduini and T. scordium subsp. scordioides, while cultivated and wild specimens of T. polium were almost identical. Differences were primarily observed in trichome dimensions and much less in micromorphological features.     

Population dynamics of wireworms (Coleoptera,Elateridae) in arable land after abandonment

The community of elaterid larvae of three sites (field and two fallows), representing different stages of secondary succession, were studied using soil sampling from 1986 to 1993. All three sites were abandoned arable land: a field cultivated until 1991, a fallow I abandoned in 1986, and a fallow II abandoned about 1976. The fallow II was used as a meadow after abandonment and was regularly mown until 1985, when cultivation stopped. Six species of Elateridae larvae were found at all three study sites. In the field, Agriotes obscurus, Athous niger, Athous subsuscus, Dalopius marginatus and Athous vittatus were found, A. niger and A. obscurus being the most abundant species. During cultivation, larval densities were very low, however, larval abundance increased up to 8.8 ± 8.3 ind. m^-2 when cultivation stopped. Only small A. obscurus larvae were found during cultivation, whereas larval size increased after abandonment. In fallow I A. obscurus, A. niger, A. subsuscus, D. marginatus, and Agrypnus murinus were found and the average annual abundance fluctuated between 0.8 ± 1.4 to 40.8 ± 10.9 ind. m^-2 with A. obscurus being the most abundant species. Fallow II supported the highest densities of wireworms from all plots studied (71.2±35.2 to 280.0±24.8 ind. m^-2). A. obscurus, A. niger, A. subsuscus and D. marginatus were found in fallow II. The abundance of all larval Elateridae as well as the dominant species A. obscurus decreased during the study period, while simultaneously the occurrence of small sized A. obscurus larvae decreased. The frequency of cultivation and time elapsed since last cultivation appeared to be the most important factors affecting elaterid occurrence in the field and fallow I. In fallow II, the decrease in abundance correlates with the accumulation of a dense litter layer, which may correspond with soil surface structure, plant community changes or predator pressure.     

The influence of depth,site exposure and season on the intensity of iceberg scouring in nearshore Antarctic waters

Ice scour disturbance has a significant effect on the physical and biological characteristics of polar benthos. A series of grids, each consisting of 25 markers, were deployed along depth transects and replicated at two contrasting study sites at Adelaide Island, West Antarctic Peninsula. Markers were surveyed and replaced every 3 months for 2 years in order to assess the frequency and intensity of iceberg impacts. Depth, site, season and year were all highly significant factors influencing ice scouring frequency. We observed a high variation in the duration of winter fast ice between sites and years, which had a marked effect on ice scouring frequency. The ecological effects of the disturbance regime are likely to include depth zonation of benthic assemblages, patchiness of communities at varying stages of recovery and the near denudation of sessile fauna in the shallow subtidal.

DarkHorse: a method for genome-wide prediction of horizontal gene transfer

A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures to improve accuracy and efficiency. The method is also useful for retrospective assessments of horizontal transfer prediction reliability, recognizing orthologous sequences that may have been previously overlooked or unavailable. These features are demonstrated in bacterial, archaeal, and eukaryotic examples.     

Power-law-like distributions in biomedical publications and research funding

Gene annotation, as measured by links to the biomedical literature and funded grants, is governed by a power law, indicating that researchers favor the extensive study of relatively few genes. This emphasizes the need for data-driven science to accomplish genome-wide gene annotation.     

Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips

Background  

Affymetrix GeneChip technology enables the parallel observations of tens of thousands of genes. It is important that the probe set annotations are reliable so that biological inferences can be made about genes which undergo differential expression. Probe sets representing the same gene might be expected to show similar fold changes/z-scores, however this is in fact not the case.     

Orthogonal projections to latent structures as a strategy for microarray data normalization

Background  

During generation of microarray data, various forms of systematic biases are frequently introduced which limits accuracy and precision of the results. In order to properly estimate biological effects, these biases must be identified and discarded.