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41.
Claire Halpin Simon C. Thain Emma L. Tilston Emma Guiney Catherine Lapierre David W. Hopkins 《Tree Genetics & Genomes》2007,3(2):101-110
Few experiments have yet been performed to explore the potential ecological impacts of genetic modification in long-lifespan
species such as trees. In this paper, we review the available data on GM trees with modified lignin focussing on the results
of the first long-term field trials of such trees. These trials evaluated poplars expressing antisense transgenes to reduce
the expression of the lignin biosynthesis genes cinnamyl alcohol dehydrogenase (CAD) or caffeic acid/5-hydroxyferulic acid
O-methyltransferase (COMT) with the aim of producing trees with improved pulping characteristics. The trees were grown for
4 years at two sites in France and England, and their ecological impacts and agronomic performance were assessed. Modifications
to lignin in the poplars were maintained over the 4 years of the trial. The trees remained healthy throughout and growth was
normal. The lignin modifications had no unexpected biological or ecological impacts. Interactions with leaf-feeding insects,
microbial pathogens and soil organisms were unaltered although the short-term decomposition of transgenic roots was slightly
enhanced. Investigation of the ecological impacts of the GM trees was curtailed by the early termination of the field trial
when it was attacked and largely destroyed by anti-GM protestors. To supplement our work on the decomposition of GM plant
materials with modified lignin, we have therefore turned to the study of transgenic tobacco lines where we can perform more
comprehensive and controlled analyses of the biological and ecological effects of lignin-gene suppression. 相似文献
42.
Hoang Bui Michael Kelly Christopher Lyon Mark Pasquier Deborah Thomas Patrick Flynn Douglas Thain 《Cluster computing》2009,12(4):373-386
Research in the field of biometrics depends on the effective management and analysis of many terabytes of digital data. The
quality of an experimental result is often highly dependent upon the sheer amount of data marshalled to support it. However,
the current state of the art requires researchers to have a heroic level of expertise in systems software to perform large
scale experiments. To address this, we have designed and implemented BXGrid, a data repository and workflow abstraction for
biometrics research. The system is composed of a relational database, an active storage cluster, and a campus computing grid.
End users interact with the system through a high level abstraction of four stages: Select, Transform, AllPairs, and Analyze.
A high degree of availability and reliability is achieved through transparent fail over, three phase operations, and independent
auditing. BXGrid is currently in daily production use by an active biometrics research group at the University of Notre Dame.
We discuss our experience in constructing and using the system and offer lessons learned in conducting collaborative research
in e-Science. 相似文献
43.
DNA adduct analysis and histopathological biomarkers in European flounder (Platichthys flesus) sampled from UK estuaries 总被引:2,自引:0,他引:2
Lyons BP Stentiford GD Green M Bignell J Bateman K Feist SW Goodsir F Reynolds WJ Thain JE 《Mutation research》2004,552(1-2):177-186
The presence of genotoxic and potentially carcinogenic chemical contaminants in the estuarine and coastal marine environment is well documented. In this study, European flounder (Platichthys flesus) sampled from eight UK estuaries were analysed for hepatic DNA adducts, using the 32P-postlabelling assay and liver histopathology as part of an on going survey to establish the health status of UK estuaries. Fish were collected from the estuaries Tyne, Mersey, Thames, Alde (reference site), Belfast, Forth, Clyde and Southampton. At the majority of contaminated sites (Southampton, Thames, Clyde, Tyne and Mersey) the predominant DNA adduct profile consisted of diagonal radioactive zones (DRZs). In contrast, flounder collected from the Forth, Alde and Belfast lacked DRZs with only background levels of DNA damage being observed. Statistically significant differences were observed between several of the sites sampled with the hepatic DNA adduct levels detected in flounder from Southampton, Thames and Clyde statistically elevated (P < 0.05) over those levels detected at the Tyne (Southampton and Thames only), Forth, Alde and Belfast. Histological analysis of these samples revealed a range of lesions including foci of cellular alteration, hepatocellular fibrillar inclusions, nuclear pleomorphisms along with non-toxicopathic changes/alterations, such as those associated with cell turnover (apoptosis, necrosis, regeneration) and immune-related functions (melanomacrophage aggregates, inflammation). Although it is difficult to associate higher prevalence of these lesion types with specific sites, generally, the lowest prevalence was seen in flounder captured from the Alde estuary, with higher prevalence (particularly of melanomacrophage aggregates, inflammation and necrotic foci) seen in fish from the contaminated sites. 相似文献
44.
P300 transcriptional repression is mediated by SUMO modification 总被引:7,自引:0,他引:7
Girdwood D Bumpass D Vaughan OA Thain A Anderson LA Snowden AW Garcia-Wilson E Perkins ND Hay RT 《Molecular cell》2003,11(4):1043-1054
45.
Nanometric biological particles such as viruses have received increased attention in a wide range of scientific fields. Evaluation of viral contributions to environmental processes and the use of viruses in medical applications such as gene therapy require viruses to be routinely and accurately enumerated. There are a variety of existing techniques for counting viruses, namely, plaque assays, transmission electron microscopy (TEM), epifluorescence microscopy (EFM), and flow cytometry (FCM); each has advantages and disadvantages. While there have been attempts to intercompare some of these techniques to determine the most effective means to count viruses, no previous study used a technique-independent standard for quantitative comparison of collection efficiency, accuracy, and precision. In this work, polystyrene nanospheres were used as standards for the intercomparison of performance characteristics for TEM, EFM, FCM, as well as a custom-built flow cytometer (the Single Nanometric Particle Enumerator, SNaPE). EFM and SNaPE exhibited the highest degree of accuracy and precision, with particle concentrations deviating < or =5% from true and relative errors less than half that of TEM, EFM and SNaPE are also significantly more time and cost efficient than TEM. 相似文献
46.
Osteoclast cell-surface changes during the egg-laying cycle in Japanese quail 总被引:2,自引:1,他引:1
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SC Miller 《The Journal of cell biology》1977,75(1):104-118
The medullary bone serves as a source of labile calcium mobilized during calcification of the egg shell in birds. Quantitative histological methods demonstrate that the numbers of medullary bone osteoclasts and nuclei per osteoclast remain unchanged during the egg cycle in the Japanese quail (Coturnix). Therefore, cyclic changes in bone resorption cannot be explained by modulations of osteoclasts from and into other bone cells, a mechanism previously suggested for certain species of birds. Rather, dramatic changes in osteoclast cell-surface features occur during the egg cycle, which might account for cyclic variations in resorptive activity. During egg shell calcification, osteoclasts with ruffled borders are closely apposed to bone surfaces; the cytoplasm is rich in vacuoles that contain mineral crystals and seem to derive from the ruffled border. At the completion of egg shell calcification, the ruffled borders and vacuoles move away from the bone surface, although the osteoclast remains attached to the bone along the filamentous or "clear" zone. Associated with the disappearance of the ruffled borders is the appearance of extensive interdigitated cell processes along the peripheral surface of the osteoclast away from the bone. These unusual structures, which may serve as a reservoir of membrane, largely disappear when ruffled borders and associated structures reappear. Therefore, in these hens, the osteoclasts modulate their cell surface rather than their population during the egg cycle. 相似文献
47.
Katharine S. Dobb Sarah J. Kaye Nicola Beckmann John L. Thain Lubomira Stateva Mike Birch Jason D. Oliver 《PloS one》2015,10(11)
Antifungal drugs acting via new mechanisms of action are urgently needed to combat the increasing numbers of severe fungal infections caused by pathogens such as Candida albicans. The phosphopantetheinyl transferase of Aspergillus fumigatus, encoded by the essential gene pptB, has previously been identified as a potential antifungal target. This study investigated the function of its orthologue in C. albicans, PPT2/C1_09480W by placing one allele under the control of the regulatable MET3 promoter, and deleting the remaining allele. The phenotypes of this conditional null mutant showed that, as in A. fumigatus, the gene PPT2 is essential for growth in C. albicans, thus fulfilling one aspect of an efficient antifungal target. The catalytic activity of Ppt2 as a phosphopantetheinyl transferase and the acyl carrier protein Acp1 as a substrate were demonstrated in a fluorescence transfer assay, using recombinant Ppt2 and Acp1 produced and purified from E.coli. A fluorescence polarisation assay amenable to high-throughput screening was also developed. Therefore we have identified Ppt2 as a broad-spectrum novel antifungal target and developed tools to identify inhibitors as potentially new antifungal compounds. 相似文献
48.
Benjamin?SC?WadeEmail author Shantanu?H?Joshi Martin?Reuter Jonathan?D?Blumenthal Arthur?W?Toga Paul?M?Thompson Jay?N?Giedd 《Biology of sex differences》2014,5(1):16
Background
Supernumerary sex chromosome aneuploidies (sSCA) are characterized by the presence of one or more additional sex chromosomes in an individual’s karyotype; they affect around 1 in 400 individuals. Although there is high variability, each sSCA subtype has a characteristic set of cognitive and physical phenotypes. Here, we investigated the differences in the morphometry of the human corpus callosum (CC) between sex-matched controls 46,XY (N =99), 46,XX (N =93), and six unique sSCA karyotypes: 47,XYY (N =29), 47,XXY (N =58), 48,XXYY (N =20), 47,XXX (N =30), 48,XXXY (N =5), and 49,XXXXY (N =6).Methods
We investigated CC morphometry using local and global area, local curvature of the CC boundary, and between-landmark distance analysis (BLDA). We hypothesized that CC morphometry would vary differentially along a proposed spectrum of Y:X chromosome ratio with supernumerary Y karyotypes having the largest CC areas and supernumerary X karyotypes having significantly smaller CC areas. To investigate this, we defined an sSCA spectrum based on a descending Y:X karyotype ratio: 47,XYY, 46,XY, 48,XXYY, 47,XXY, 48,XXXY, 49,XXXXY, 46,XX, 47,XXX. We similarly explored the effects of both X and Y chromosome numbers within sex. Results of shape-based metrics were analyzed using permutation tests consisting of 5,000 iterations.Results
Several subregional areas, local curvature, and BLDs differed between groups.Moderate associations were found between area and curvature in relation to the spectrum and X and Y chromosome counts. BLD was strongly associated with X chromosome count in both male and female groups.Conclusions
Our results suggest that X- and Y-linked genes have differential effects on CC morphometry. To our knowledge, this is the first study to compare CC morphometry across these extremely rare groups.49.
Colleen G Canning Cathie Sherrington Stephen R Lord Victor SC Fung Jacqueline CT Close Mark D Latt Kirsten Howard Natalie E Allen Sandra D O'Rourke Susan M Murray 《BMC neurology》2009,9(1):4-7
Background
People with Parkinson's disease are twice as likely to be recurrent fallers compared to other older people. As these falls have devastating consequences, there is an urgent need to identify and test innovative interventions with the potential to reduce falls in people with Parkinson's disease. The main objective of this randomised controlled trial is to determine whether fall rates can be reduced in people with Parkinson's disease using exercise targeting three potentially remediable risk factors for falls (reduced balance, reduced leg muscle strength and freezing of gait). In addition we will establish the cost effectiveness of the exercise program from the health provider's perspective.Methods/Design
230 community-dwelling participants with idiopathic Parkinson's disease will be recruited. Eligible participants will also have a history of falls or be identified as being at risk of falls on assessment. Participants will be randomly allocated to a usual-care control group or an intervention group which will undertake weight-bearing balance and strengthening exercises and use cueing strategies to address freezing of gait. The intervention group will choose between the home-based or support group-based mode of the program. Participants in both groups will receive standardized falls prevention advice. The primary outcome measure will be fall rates. Participants will record falls and medical interventions in a diary for the duration of the 6-month intervention period. Secondary measures include the Parkinson's Disease Falls Risk Score, maximal leg muscle strength, standing balance, the Short Physical Performance Battery, freezing of gait, health and well being, habitual physical activity and positive and negative affect schedule.Discussion
No adequately powered studies have investigated exercise interventions aimed at reducing falls in people with Parkinson's disease. This trial will determine the effectiveness of the exercise intervention in reducing falls and its cost effectiveness. This pragmatic program, if found to be effective, has the potential to be implemented within existing community services.Trial registration
The protocol for this study is registered with the Australian New Zealand Clinical Trials Registry (ACTRN12608000303347). 相似文献50.
C.A. Richardson C. Saurel J. Thain 《Journal of experimental marine biology and ecology》2005,325(1):55-64
Growth rings present in whole and sectioned statoliths were used to determine the age of red whelks Neptunea antiqua, from the North Sea. Validation of the periodicity of the rings was established in four whelks by comparing the number of statolith rings with the number of seasonal Mg:Ca ratio cycles present in shell calcium carbonate samples drilled sequentially from along the growth axis. There was exact correspondence between the number of growth rings and the number of element ratio cycles in two of the shells and a 1-year difference in the estimated age between the two methods in the other two shells, evidence which is strongly indicative of an annual periodicity of deposition to the statolith rings. The estimated age of the whelks using the statolith rings varied between 4 years (shell length 102 mm) and 17 years (shell length 148 mm). The age of the whelks ascertained from the statoliths was compared with age estimates from the number of adventitious layers in sectioned opercula. The number of adventitious layers in whelks from 51 to 148 mm shell length ranged between 1 and 12 years. No significant difference was observed between the number of strongly defined statolith rings and number of opercula adventitious layers. 相似文献