Isolation of cDNAs encoding for two distinct isoforms of the TATA-Box binding proteins from common bean (<Emphasis Type="Italic">Phaseolus vulgaris</Emphasis> L.)

The TATA-box binding protein (TBP) is one of the 4 DNA-binding proteins that has been shown to associate with the proximal promoter region (−295) of the gene for bean seed storage protein phaseolin. The −295 promoter is essential for spatial and temporal control of the phaseolin gene expression. We designed a pair of degenerated primers based on the highly conserved sequence of the carboxyl-terminal domain of yeast TBP and used PCR to amplify the corresponding sequence from the bean cDNA. By using the amplified fragment as a probe, we screened a cDNA library derived from poly A(+) RNA from developing bean seeds and isolated 2 nearly full-length cDNA clones (813 and 826 bp long). The cDNAs encode 2 distinct isoforms of bean TBP, PV1 and PV2, each with an open reading frame of 200 amino acid residues. The 2 cDNA sequences share an 85.8% overall nucleotide sequence identity, with the coding region showing a higher degree of identity (94.4%) than the 5′- and 3′-untranslated regions (69%). The deduced amino acid sequence of the bean TBP isoforms differ in only 3 amino acid residues at positions 5, 9, and 16, all located in the amino-terminal region. The carboxyl-terminal domain of 180 amino acid residues shows a high degree (>82%) of evolutionary sequence conservation with the TBP sequences from other eukaryotic species. This domain possesses the 3 highly conserved structural motifs, namely the 2 direct repeat sequences, a central basic region rich in basic amino acid residues, and a region similar to the sigma factor of prokaryote. On the basis of this and other findings, we suggest that higher plants in general may have at least 2 copies of TBP gene, presumably resulting from the global duplication of the genome. Accession numbers AF015784 and AF015785 at the GenBank.     

Plasma Membrane Ghosts Form Differently When Produced from Microtubule-Free Tobacco BY-2 Cells

When lysed in an actin stabilizing buffer, protoplasts madefrom tobacco BY-2 suspension culture cells formed plasma membraneghosts that retained both cortical actin and microtubules. Distinctcytoskeletal arrays occurred: the most common ghost array (typeI) derived from protoplasts in interphase and had random actinand microtubules, although the alignment of the actin was dependent,at least partially, on microtubule organization. Type II ghostswere larger and more irregular in shape than type I ghosts,and were characterized by a lack of microtubules and the presenceof distinctive arrays of actin bundles in concentric arcs. Theseghosts derived from protoplasts lacking cortical microtubulesproduced when wall digestion occurred while the cells were incell division, or from protoplasts isolated in the presenceof 100 µM propyzamide. Because type II ghosts derivedfrom protoplasts of similar size to those that give rise totype I ghosts, and because type II ghosts retained ordered actinarrays while the parent protoplasts had random cortical actin,type II ghosts apparently form differently to type I ghosts.We speculate that instead of the protoplast being sheared offto produce a round ghost, the plasma membrane tears and collapsesonto the slide, ordering the actin bundles in the process. Oneimplication of this model would be that cortical microtubulesprovide structural support to the plasma membrane of the protoplastso that only in their absence do the type II ghosts form. (Received May 26, 1998; Accepted October 26, 1998)     

Saline and buffers minimize the action of interfering factors in the bacterial endotoxins test

The bacterial endotoxins test (BET) is the most sensitive assay for measuring endotoxin levels in solution. However, it is difficult to quantify endotoxin levels in some solutions because unknown interfering factors may inhibit or enhance the Limulus amebocyte lysate (LAL) coagulation reaction. We investigated the mechanisms of this interference and found that interference can be reduced or totally suppressed by preparing sample solutions in saline, Dulbecco’s phosphate-buffered saline (D-PBS), N,N-bis-(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), or 2-amino-2-hydroxymethyl-1,3-propanediol (Tris) buffers. We examined the inhibitory effect on the interfering action of various reagents. The reagents examined were classified into two groups: a weak interference and a strong interference group. The interference of the strong interference group was suppressed by adding endotoxin and the test factors to LAL individually. Endotoxin peaks analyzed by gel-filtration HPLC disappeared in the presence of interfering factors. When buffers were used to prepare sample solutions instead of water, endotoxin peaks were maintained and interference with LAL reaction was suppressed. These results indicate that for the strong interference group, interference of the LAL reaction was a direct consequence of interfering factors binding to endotoxin. This alters endotoxin complexation, but this effect may be suppressed by preparing solutions in saline or other buffers instead of in water.     

Adenosine-induced dilation of rat thoracic aorta is mediated by cyclic GMP and is age-dependent

Abstract

Contrary to the established concept that the effects of adenosine are mediated by CAMP, we found that the vasodilator effect of adenosine is in part mediated by cGMP, and decreased with age.     

Grooming relationships of adolescent orphans in a free-ranging group of Japanese macaques (Macaca fuscata) at Katsuyama: a comparison among orphans with sisters, orphans without sisters, and females with a surviving mother

The present study examined grooming relationships of adolescent females in a free-ranging group of Japanese macaques (Macaca fuscata) at Katsuyama. To assess whether the loss of the mother influenced the grooming relationships of adolescent females (5–7 years old), we compared the time spent in grooming interactions and the number of grooming partners among the following three groups: 6 adolescent orphans with sisters, 9 adolescent orphans without sisters, and 11 adolescent non-orphans with surviving mothers. In Japanese macaques, grooming most frequently occurs between mothers and their daughters. Therefore, it is expected that if the mother is lost, orphans will devote less time to grooming interactions than non-orphans. However, the time spent in overall grooming interactions did not differ among the three groups. While non-orphans maintained grooming relationships with their mothers, orphans acquired alternative grooming relationships with other group members. Orphans adopted two kinds of tactics to compensate for the loss of the mother. First, adolescent orphans with sisters developed more affiliative grooming relationships with their sisters than non-orphans with sisters. Secondly, adolescent orphans without sisters spent more time in grooming interactions with same-aged females and non-related adult females. Moreover, regarding grooming interactions with same-aged females and non-related adult females, orphans without sisters had a larger number of grooming partners than non-orphans. These results indicate that adolescent females have enough flexibility to develop their grooming network after the loss of their mothers, and that the lack of mother and sisters might accelerate socialization of adolescent females and enable them to be integrated in reciprocal adult grooming relationships.     

Inhibition of proteasome by MG-132 treatment causes extra phragmoplast formation and cortical microtubule disorganization during M/G1 transition in synchronized tobacco cells

The 26S proteasome plays essential roles in cell cycle progression in various types of cell. We previously reported that the inhibition of 26S proteasome activities by a proteasome inhibitor, MG-132, exclusively caused cell cycle arrest in synchronized tobacco BY-2 cells. Here we report a further observation of 26S proteasome involvement during M/G1 transition utilizing a transgenetic BY-2 cell line that stably expresses a GFP-alpha-tubulin fusion protein (BY-GT16). Interestingly, MG-132 treatment caused the arrest of cell cycle progression prior to entering the G1 phase. Indeed, phragmoplast-like structures were formed and cortical microtubules were not organized after the collapse of the original phragmoplasts. Additionally, actin microfilaments showed irregular rearrangements when further incubated with MG-132 and as the phragmoplast-like structures developed. Since these phragmoplast-like structures had a similar configuration and ability to form cell plates to that of the original phragmoplasts, we designated these phragmoplast-like structures as extra phragmoplasts. Furthermore, we showed that a tobacco kinesin-related polypeptide of 125 kDa (TKRP125) localized in the extra phragmoplasts and that its protein level remained unchanged during MG-132 treatment. We propose that TKRP125 might be one of the possible targets of the ubiquitin-proteasome degradation pathway during M/G1 transition.     

Management of below-ground biomass of <Emphasis Type="Italic">Typha angustifolia</Emphasis> by harvesting shoots above the water surface on different summer days

A dynamic model of regrowth in Typha angustifolia after cutting shoots above the water surface was formulated by characterizing the phenology and mobilization of resources from below-ground to above-ground organs after the cutting. The model parameters were determined by two cutting experiments to investigate the different strategies with flowering and non-flowering shoots after cutting in 2001 and by four cutting experiments to elucidate the regrowth characteristics after cutting on different days from June to September in 2002. A difference was evident both for flowering and non-flowering shoots and for each cutting day. From June to August, non-flowering shoots regrew immediately after cutting, but flowering shoots did not. The shoot regrowth height, number of leaves and shoot biomass were higher with the earlier cutting. The model was validated using the below-ground biomass observed in December 2002 and below-ground dynamics observed in 2003. In the low-flowering shoot zone of the stands, in which the percentage of flowering shoots was small (around 10%), the decrease in below-ground biomass became larger from June (20%) to August (60%). Cutting the high-flowering shoot zone (flowering shoots: 78%) in July 2001, just 1 week after peduncle formation, decreased the below-ground biomass by about 50%. In the low-flowering shoot zone, cutting just before senescence is better for decreasing below-ground biomass with a smaller rate of flowering shoots. The difference of below-ground biomass reduction in non-flowering shoots is mainly due to the decrease in downward translocation (DWT) of above-ground material to below-ground organs during senescence, because of the decrease in regrowth biomass. As for flowering shoots, the decrease in the photosynthate transportation from above-ground to below-ground organs and that of DWT are closely related because they cannot grow again within the season.     

The Wilms tumor protein is persistently associated with the nuclear matrix throughout the cell cycle

In order to investigate the subnuclear interactions of the WTI gene product, nuclear fractionation analyses were performed with human osteosarcoma HOS and myelogenous leukemia K562 cells. The WT1 protein was tightly associated with the nucleus and was resistant to high-salt or derergent extraction and DNase I digestion. Both the expression level and stability of WT1 and its resistance to high salt and DNase I treatments remained constant during the cell cycle. In addition, human WT1 ectopically expressed in mouse NIH3T3 cells was also resistant to these treatments. These results suggest that WT1 functions in tight association with the nuclear matrix.