The activity of the pentose phosphate pathway in isolated liver cells

Isolated liver cells have been used to assess the relative contribution of the pentose phosphate pathway to glucose metabolism. The incorporation of carbon from specifically labelled glucose into ¹⁴CO₂ by isolated cells gave values (μg.atoms/g.cells/hr) of: C-1, 7.9; C-6, 1.3; C-U, 3.4. The corresponding figures for liver slices were: C-1, 2.3; C-6, 1.6; C-U, 3.0. The most striking difference was the 3.5-fold increase in the oxidation of C-1 of glucose. Isolated cells retain more than 50% of ATP and have a content of intermediates of the glycolytic pathway closely similar to freeze-clamped liver. The relative importance of the pentose phosphate pathway in isolated liver cells, approximately 16% of glucose catabolised, is consistent with the enzyme profile of liver and the reductive synthetic reactions of the tissue.     

Identification of molecular contacts between the U1 A small nuclear ribonucleoprotein and U1 RNA.

We recently determined the crystal structure of the RNP domain of the U1 small nuclear ribonucleoprotein A and identified Arg and Lys residues involved in U1 RNA binding. These residues are clustered around the two highly conserved segments, RNP1 and RNP2, located in the central two beta strands. We have now studied the U1 RNA binding of mutants where potentially hydrogen bonding residues on the RNA binding surface were replaced by non-hydrogen bonding residues. In the RNP2 segment, the Thr11----Val and Asn15----Val mutations completely abolished, and the Tyr13----Phe and Asn16----Val mutations substantially reduced the U1 RNA binding, suggesting that these residues form hydrogen bonds with the RNA. In the RNP1 segment Arg52----Gln abolished, but Arg52----Lys only slightly affected U1 RNA binding, suggesting that Arg52 may form a salt bridge with phosphates of U1 RNA. Ethylation protection experiments of U1 RNA show that the backbone phosphates of the 3' two-thirds of loop II and the 5' stem are in contact with the U1 A protein. The U1 A protein-U1 RNA binding constant is substantially reduced by A----G and G----A replacements in loop II, but not by C----U or U----C replacements. Based on these biochemical data we propose a structure for the complex between the U1 A ribonucleoprotein and U1 RNA.     

Mytella strigata (Bivalvia: Mytilidae): an alien mussel recently introduced to Singapore and spreading rapidly

The American brackish-water mussel Mytella strigata is reported from Singapore for the first time. In 2016 a survey of intertidal hard structures in the Johor Straits revealed its almost ubiquitous presence in high mean densities, up to 124?±?32 individuals 25?cm^?2 along the shoreline. Subtidal nets employed by floating fish farms were also fouled with this species. Densities exceeding 10,000 individuals 100?cm^?2 were observed, to the exclusion of its relative Perna viridis, the Asian green mussel. Size-frequency analyses of shells indicated the presence of both juveniles and adults. Juveniles have an extremely variable shell surface pigmentation. The adults, reaching 5?cm in shell length, generally have a thick dark greenish brown to almost black periostracum, but bright green and olive green individuals, some with distinctive brown streaks, have also been observed. However, sequences of the mitochondrial COI gene were consistent with mussels from Brazil, Colombia and Ecuador, where they are natively distributed, while shells were reconcilable with type material. The species may have been transported in ballast water and/or with fouling directly from its native provinces, or spread from the Philippines where there are already established populations of M. strigata, possibly since the nineteenth century.     

Relationship between Trusting Behaviors and Psychometrics Associated with Social Network and Depression among Young Generation: A Pilot Study

Maladaptive social interaction and its related psychopathology have been highlighted in psychiatry especially among younger generations. In Japan, novel expressive forms of psychiatric phenomena such as “modern-type depression” and “hikikomori” (a syndrome of severe social withdrawal lasting for at least six months) have been reported especially among young people. Economic games such as the trust game have been utilized to evaluate real-world interpersonal relationships as a novel candidate for psychiatric evaluations. To investigate the relationship between trusting behaviors and various psychometric scales, we conducted a trust game experiment with eighty-one Japanese university students as a pilot study. Participants made a risky financial decision about whether to trust each of 40 photographed partners. Participants then answered a set of questionnaires with seven scales including the Lubben Social Network Scale (LSNS)-6 and the Patient Health Questionnaire (PHQ)-9. Consistent with previous research, male participants trusted partners more than female participants. Regression analysis revealed that LSNS-family (perceived support from family) for male participants, and item 8 of PHQ-9 (subjective agitation and/or retardation) for female participants were associated with participants’ trusting behaviors. Consistent with claims by social scientists, our data suggest that, for males, support from family was negatively associated with cooperative behavior toward non-family members. Females with higher subjective agitation (and/or retardation) gave less money toward males and high attractive females, but not toward low attractive females in interpersonal relationships. We believe that our data indicate the possible impact of economic games in psychiatric research and clinical practice, and validation in clinical samples including modern-type depression and hikikomori should be investigated.     

Single cell RNA‐seq in the sea urchin embryo show marked cell‐type specificity in the Delta/Notch pathway

Sea urchin embryos are excellent for in vivo functional studies because of their transparency and tractability in manipulation. They are also favorites for pharmacological approaches since they develop in an aquatic environment and addition of test substances is straightforward. A concern in many pharmacological tests though is the potential for pleiotropic effects that confound the conclusions drawn from the results. Precise cellular interpretations are often not feasible because the impact of the perturbant is not known. Here we use single‐cell mRNA (messenger RNA) sequencing as a metric of cell types in the embryo and to determine the selectivity of two commonly used inhibitors, one each for the Wnt and the Delta‐Notch pathways, on these nascent cell types. We identified 11 distinct cell types based on mRNA profiling, and that the cell lineages affected by Wnt and Delta/Notch inhibition were distinct from each other. These data support specificity and distinct effects of these signaling pathways in the embryo and illuminate how these conserved pathways selectively regulate cell lineages at a single cell level. Overall, we conclude that single cell RNA‐seq analysis in this embryo is revealing of the cell types present during development, of the changes in the gene regulatory network resulting from inhibition of various signaling pathways, and of the selectivity of these pathways in influencing developmental trajectories.     

Endogenous pararetroviral sequences in tomato (<Emphasis Type="Italic">Solanum lycopersicum</Emphasis>) and related species

Background  

Endogenous pararetroviral sequences (EPRVs) are a recently discovered class of repetitive sequences that is broadly distributed in the plant kingdom. The potential contribution of EPRVs to plant pathogenicity or, conversely, to virus resistance is just beginning to be explored. Some members of the family Solanaceae are particularly rich in EPRVs. In previous work, EPRVs have been characterized molecularly in various species of Nicotiana including N.tabacum (tobacco) and Solanum tuberosum (potato). Here we describe a family of EPRVs in cultivated tomato (Solanum lycopersicum L.) and a wild relative (S.habrochaites).