Parasites of fishes in the recently inundated ephemeral Lake Liambezi,Namibia

Lake Liambezi forms the periodic connection between the upper Zambezi, Kwando and Okavango rivers. A full parasitological assessment was conducted on 86 fish, representing 14 species in six families sampled in August 2011. Parasite diversity was low and dominated by species with complex life cycles involving intermediate hosts. Most prevalent were larval nematodes (Contracaecum sp.) infecting 12 and Trypanasoma sp. infecting nine of the 14 host species. The intra-erythrocytic parasite Babesiosoma mariae was found in the blood of Coptodon rendalli and Oreochromis andersonii with prevalence of 50% and 60%, respectively. The host-specific monogenean Annulotrema hepseti was recorded only from H. cuvieri with a prevalence of 100%. Notable absences were the copepod and branchiuran parasites that have direct lifecycles and usually occur in high prevalence and abundance in the region. Because parasites with direct life cycles can only be transported into the lake on the host fish, their absence suggests limited immigration of infected fishes into the lake. This suggests that internal recruitment dominates over immigration in the fish population dynamics in Lake Liambezi.     

Step back from the forest and step up to the Bonn Challenge: how a broad ecological perspective can promote successful landscape restoration

We currently face both an extinction and a biome crisis embedded in a changing climate. Many biodiverse ecosystems are being lost at far higher rates than they are being protected or ecologically restored. At the same time, natural climate solutions offer opportunities to restore biodiversity while mitigating climate change. The Bonn Challenge is a U.N. programme to restore biodiversity and mitigate climate change through restoration of the world's degraded landscapes. It provides an unprecedented chance for ecological restoration to become a linchpin tool for addressing many environmental issues. Unfortunately, the Forest and Landscape Restoration programme that underpins the Bonn Challenge, as its name suggests, remains focused on trees and forests, despite rising evidence that many non‐forest ecosystems also offer strong restoration potential for biodiversity and climate mitigation. We see a need for restoration to step back to be more inclusive of different ecosystem types and to step up to provide integrated scientific knowledge to inform large‐scale restoration. Stepping back and up will require assessments of where to restore what species, with recognition that in many landscapes multiple habitat types should be restored. In the process, trade‐offs in the delivery of different ecosystem services (e.g. carbon, biodiversity, water, albedo, livestock forage) should be clearly addressed. We recommend that biodiversity safeguards be included in policy and implemented in practice, to avoid undermining the biophysical relationships that provide ecosystem resilience to climate change. For ecological restoration to contribute to international policy goals will require integrated large‐scale science that works across biome boundaries.     

Diversity promotes temporal stability across levels of ecosystem organization in experimental grasslands

The diversity-stability hypothesis states that current losses of biodiversity can impair the ability of an ecosystem to dampen the effect of environmental perturbations on its functioning. Using data from a long-term and comprehensive biodiversity experiment, we quantified the temporal stability of 42 variables characterizing twelve ecological functions in managed grassland plots varying in plant species richness. We demonstrate that diversity increases stability i) across trophic levels (producer, consumer), ii) at both the system (community, ecosystem) and the component levels (population, functional group, phylogenetic clade), and iii) primarily for aboveground rather than belowground processes. Temporal synchronization across studied variables was mostly unaffected with increasing species richness. This study provides the strongest empirical support so far that diversity promotes stability across different ecological functions and levels of ecosystem organization in grasslands.     

Community assembly and biomass production in regularly and never weeded experimental grasslands

We studied the natural colonisation of new species in experimental grasslands varying in plant species richness (from 1 to 60) and plant functional group richness (from 1 to 4) in either regularly or never weeded subplots during the first 3 years after establishment. Sown species established successfully, with no differences in species richness or their relative abundances between the regularly and never weeded subplots during the study period. Aboveground biomass of sown species increased with increasing sown species richness in both treatments. While a positive relationship between sown species richness and total aboveground biomass (including colonising species) existed in the 2nd year after sowing in the regularly and never weeded subplots, this positive relationship decayed in the 3rd year in the never weeded subplots because of a higher biomass of colonising species in species-poor mixtures. Total aboveground biomass varied independently of total species richness 3 years after sowing in both treatments. Jaccard similarity of coloniser species composition between regularly and never weeded subplots decreased from the 2nd to the 3rd year, indicating a divergence in coloniser species composition. Coloniser immigration and turnover rates were higher in regularly weeded subplots, confirming that weeding counteracts species saturation and increases the chance that new colonisers would establish. Although our study shows that low diversity plant communities are unstable and converge to higher levels of biodiversity, the effects of initially sown species on community composition persisted 3 years after sowing even when allowing for succession, suggesting that colonising species mainly filled empty niche space.     

Bridging Restoration Science and Practice: Results and Analysis of a Survey from the 2009 Society for Ecological Restoration International Meeting

Developing and strengthening a more mutualistic relationship between the science of restoration ecology and the practice of ecological restoration has been a central but elusive goal of SERI since its inaugural meeting in 1989. We surveyed the delegates to the 2009 SERI World Conference to learn more about their perceptions of and ideas for improving restoration science, practice, and scientist/practitioner relationships. The respondents' assessments of restoration practice were less optimistic than their assessments of restoration science. Only 26% believed that scientist/practitioner relationships were “generally mutually beneficial and supportive of each other,” and the “science–practice gap” was the second and third most frequently cited category of factors limiting the science and practice of restoration, respectively (“insufficient funding” was first in both cases). Although few faulted practitioners for ignoring available science, many criticized scientists for ignoring the pressing needs of practitioners and/or failing to effectively communicate their work to nonscientists. Most of the suggestions for bridging the gap between restoration science and practice focused on (1) developing the necessary political support for more funding of restoration science, practice, and outreach; and (2) creating alternative research paradigms to both facilitate on‐the‐ground projects and promote more mutualistic exchanges between scientists and practitioners. We suggest that one way to implement these recommendations is to create a “Restoration Extension Service” modeled after the United States Department of Agriculture's Cooperative Extension Service. We also recommend more events that bring together a fuller spectrum of restoration scientists, practitioners, and relevant stakeholders.     

Efficient dilution-to-extinction isolation of novel virus–host model systems for fastidious heterotrophic bacteria

Microbes and their associated viruses are key drivers of biogeochemical processes in marine and soil biomes. While viruses of phototrophic cyanobacteria are well-represented in model systems, challenges of isolating marine microbial heterotrophs and their viruses have hampered experimental approaches to quantify the importance of viruses in nutrient recycling. A resurgence in cultivation efforts has improved the availability of fastidious bacteria for hypothesis testing, but this has not been matched by similar efforts to cultivate their associated bacteriophages. Here, we describe a high-throughput method for isolating important virus–host systems for fastidious heterotrophic bacteria that couples advances in culturing of hosts with sequential enrichment and isolation of associated phages. Applied to six monthly samples from the Western English Channel, we first isolated one new member of the globally dominant bacterial SAR11 clade and three new members of the methylotrophic bacterial clade OM43. We used these as bait to isolate 117 new phages, including the first known siphophage-infecting SAR11, and the first isolated phage for OM43. Genomic analyses of 13 novel viruses revealed representatives of three new viral genera, and infection assays showed that the viruses infecting SAR11 have ecotype-specific host ranges. Similar to the abundant human-associated phage ɸCrAss001, infection dynamics within the majority of isolates suggested either prevalent lysogeny or chronic infection, despite a lack of associated genes, or host phenotypic bistability with lysis putatively maintained within a susceptible subpopulation. Broader representation of important virus–host systems in culture collections and genomic databases will improve both our understanding of virus–host interactions, and accuracy of computational approaches to evaluate ecological patterns from metagenomic data.Subject terms: Bacteriophages, Microbial ecology     

Priority effects and ecological restoration

Priority effects refer to the order or timing of species arrival, including how species that arrive early at a site either positively or negatively affect establishment, growth, or reproduction of species that arrive later. Despite the clear implications of priority effects for ecological restoration, there have been no reviews of how and where priority effects have been studied and the extent to which findings can be applied to restoration. Here, we systematically review the literature on priority effects by (1) synthesizing information from papers that compared simultaneous and nonsimultaneous planting or sowing; (2) discussing the mechanisms through which priority effects operate, (3) considering how these mechanisms might be manipulated to achieve restoration goals; and (4) highlighting future research needed to improve the use of priority effects in restoration. In a term‐targeted search, we found 43 studies that experimentally manipulated the order of arrival of different species. Overall, these concluded that even small delays in arrival time, as opposed to simultaneous arrival of species, can promote differences in subsequent community composition as well as ecosystem functions. There were very few studies on the long‐term stability of these priority effects, and the majority were conducted in temperate grasslands. Our findings suggest that creating alternative vegetation states via priority treatments is a promising avenue for restoration. However, for the concept to be best operationalized for restoration, we need research in more ecosystems that are priorities for restoration, and treatments that are followed over extended time periods.