Bioinformatics Analysis of Domain 1 of HCV-Core Protein: Iran

International Journal of Peptide Research and Therapeutics - Hepatitis C virus (HCV) infection is a serious global health problem and a cause of chronic hepatitis, liver cirrhosis, and...     

Superior adaptation of aerobic rice under drought stress in Iran and validation test of linked SSR markers to major QTLs by MLM analysis across two years

Molecular Biology Reports - Drought is one of the biggest challenges for rice (Oryza sativa L.) production in rainfed areas. Developing “aerobic rice” cultivars could be a valuable...     

Charge Carrier Dynamics in a Ternary Bulk Heterojunction System Consisting of P3HT,Fullerene, and a Low Bandgap Polymer

The photoresponse of P3HT:PC₆₁BM based organic solar cells can be enhanced by blending the bulk heterojunction with the low band gap polymer Si‐ PCPDTBT. Organic solar cells containing the resulting ternary blend as the photoactive layer deliver short circuit currents of up to 15.5 mA cm^?2. Morphological studies show modest phase separation without the perturbation of the crystallinity of the P3HT:PC₆₁BM matrix, in accordance with the measured acceptable fill factors. Picosecond time‐resolved pump‐probe spectroscopy reveals that the sensitization of P3HT:PC₆₁BM with Si‐PCPDTBT involves the transfer of photogenerated positive polarons from the low band gap polymer to P3HT within few hundreds of picoseconds. Intensity dependent experiments in combination with global fitting show that the charge transfer from Si‐PCPDTBT to P3HT competes with non‐geminate charge carrier recombination of the holes in the Si‐PCPDTBT phase with electrons in the PC₆₁BM phase, both processes being of diffusive nature. At excitation densities corresponding to steady state conditions under one sun, modelling predicts hole transfer efficiencies exceeding 90%, in accordance with IQE measurements. At higher pump intensities, bimolecular recombination suppresses the hole transfer process effectively.     

ITO‐Free and Fully Solution‐Processed Semitransparent Organic Solar Cells with High Fill Factors

Organic photovoltaic (OPV) solar cells that can be simply processed from solution are in the focus of the academic and industrial community because of their enormous potential to reduce cost. One big challenge in developing a fully solution‐processed OPV technology is the design of a well‐performing electrode system, allowing the replacement of ITO. Several solution‐processed electrode systems were already discussed, but none of them could match the performance of ITO. Here, we report efficient ITO‐free and fully solution‐processed semitransparent inverted organic solar cells based on silver nanowire (AgNW) electrodes. To demonstrate the potential of these AgNW electrodes, they were employed as both the bottom and top electrodes. Record devices achieved fill factors as high as 63.0%, which is comparable to ITO based reference devices. These results provide important progress for fully printed organic solar cells and indicate that ITO‐free, transparent as well as non‐transparent organic solar cells can indeed be fully solution‐processed without losses.     

Target Cell Availability,Rather than Breast Milk Factors,Dictates Mother-to-Infant Transmission of SIV in Sooty Mangabeys and Rhesus Macaques

Mother-to-infant transmission (MTIT) of HIV is a serious global health concern, with over 300,000 children newly infected in 2011. SIV infection of rhesus macaques (RMs) results in similar rates of MTIT to that of HIV in humans. In contrast, SIV infection of sooty mangabeys (SMs) rarely results in MTIT. The mechanisms underlying protection from MTIT in SMs are unknown. In this study we tested the hypotheses that breast milk factors and/or target cell availability dictate the rate of MTIT in RMs (transmitters) and SMs (non-transmitters). We measured viral loads (cell-free and cell-associated), levels of immune mediators, and the ability to inhibit SIV infection in vitro in milk obtained from lactating RMs and SMs. In addition, we assessed the levels of target cells (CD4+CCR5+ T cells) in gastrointestinal and lymphoid tissues, including those relevant to breastfeeding transmission, as well as peripheral blood from uninfected RM and SM infants. We found that frequently-transmitting RMs did not have higher levels of cell-free or cell-associated viral loads in milk compared to rarely-transmitting SMs. Milk from both RMs and SMs moderately inhibited in vitro SIV infection, and presence of the examined immune mediators in these two species did not readily explain the differential rates of transmission. Importantly, we found that the percentage of CD4+CCR5+ T cells was significantly lower in all tissues in infant SMs as compared to infant RMs despite robust levels of CD4+ T cell proliferation in both species. The difference between the frequently-transmitting RMs and rarely-transmitting SMs was most pronounced in CD4+ memory T cells in the spleen, jejunum, and colon as well as in central and effector memory CD4+ T cells in the peripheral blood. We propose that limited availability of SIV target cells in infant SMs represents a key evolutionary adaptation to reduce the risk of MTIT in SIV-infected SMs.     

Mitochondrial evidence for genetic diversity and low phylogeographic differentiation in the Marsh Warbler Acrocephalus palustris (Aves: Acrocephalidae)

We analyzed the levels of genetic variability in a long-distance migratory reed warbler, the Marsh Warbler Acrocephalus palustris, by using nucleotide sequences of the mitochondrial cytochrome c oxidase subunit I gene (COI; 611 nucleotides [nt]). We obtained sequences from 229 individuals from ten sampling sites that include breeding, wintering, and migrating birds. Overall, 44 haplotypes were detected, which reflect high levels of genetic variation in this species, but most of this variation corresponds to individual differences within collecting sites. We also analyzed 829 nt of cytochrome b (cyt b) from 49 selected individuals of different sampling sites to evaluate the reliability of the COI results. Our analyses based on both mtDNA loci could not detect any population subdivision or phylogeographic structure, indicating high levels of gene flow between breeding sites (Nm?=?13.69). The split between the Marsh Warbler and its sister species, the Eurasian Reed Warbler Acrocephalus scirpaceus, could be dated for the Lower Pliocene (about 3.8 million years ago). The time to the most recent common ancestor (TMRCA) among Marsh Warbler haplotypes was estimated as 0.45 million years, indicating their bottleneck during the last glacial periods. Low nucleotide diversity, a shallow phylogenetic tree, a star-like haplotype network, and a unimodal mismatch distribution point to a sudden increase of the effective population size (probably after the last glaciation period) and a recent range expansion likely from a single refuge.     

Alkyl Chain Engineering of Solution‐Processable Star‐Shaped Molecules for High‐Performance Organic Solar Cells

The impact of alkyl side‐chain substituents on conjugated polymers on the photovoltaic properties of bulk heterojunction (BHJ) solar cells has been studied extensively, but their impact on small molecules has not received adequate attention. To reveal the effect of side chains, a series of star‐shaped molecules based on a triphenylamine (TPA) core, bithiophene, and dicyanovinyl units derivatized with various alkyl end‐capping groups of methyl, ethyl, hexyl and dodecyl is synthesiyed and studied to comprehensively investigate structure‐properties relationships. UV‐vis absorption and cyclic voltammetry data show that variations of alkyl chain length have little influence on the absorption and highest occupied molecular orbital (HOMO)‐lowest unoccupied molecular orbital (LUMO) levels. However, these seemingly negligible changes have a pronounced impact on the morphology of BHJ thin films as well as their charge carrier separation and transportation, which in turn influences the photovoltaic properties of these small‐molecule‐based BHJ devices. Solution‐processed organic solar cells (OSCs) based on the small molecule with the shortest methyl end groups exhibit high short circuit current (J_sc) and fill factor (FF), with an efficiency as high as 4.76% without any post‐treatments; these are among the highest reported for solution‐processed OSCs based on star‐shaped molecules.     

In vitro Osteogenic impulse effect of Dexamethasone on periodontal ligament stem cells

Periodontium is a complex organ composed of mineralized epithelial and connective tissue. Dexamethasone could stimulate proliferation of osteoblast and fibroblasts. This study aimed to assess the osteogenic effect of dexamethasone on periodental ligament (PDL) stem cells. PDL stem cells were collected from periodontal ligament tissue of root of extracted premolar of young and healthy people. The stem cells were cultured in α-MEM Medium in three groups, one group with basic medium contains (α- MEM and FBS 10 % and 50 mmol of β_ gelisrophosphat and L_ ascorbic acid µg/ml), the second group: basic medium with dexamethasone and the third one: basic medium without any osteogenic stimulant. Mineralization of cellular layer was analyzed with Alizarin red stain method. Osteogenic analysis was done by Alkaline phosphates and calcium test. These analysis indicated that the amount of intra-cellular calcium and alkaline phosphates in the Dexamethasone group was far more than the control and basic group (P<0.05). The results of Alizarin red stain indicated more mineralization of cultured cells in Dexamethasone group (P<0.05). The study results showed that Dexamethasone has significant osteogenic effect on PDL stem cells and further studies are recommended to evaluate its effect on treatment of bone disorders.     

Effects of Alkyl Terminal Chains on Morphology,Charge Generation,Transport, and Recombination Mechanisms in Solution‐Processed Small Molecule Bulk Heterojunction Solar Cells

Length of the terminal alkyl chains at dicyanovinyl (DCV) groups of two dithienosilole (DTS) containing small molecules ( DTS(Oct)₂‐(2T‐DCV‐Me)₂ and DTS(Oct)₂‐(2T‐DCV‐Hex)₂ ) is investigated to evaluate how this affects the molecular solubility and blend morphology as well as their performance in bulk heterojunction organic solar cells (OSCs). While the DTS(Oct)₂‐(2T‐DCV‐Me)₂ (a solubility of 5 mg mL^?1) system exhibits both high short circuit current density (J _sc) and high fill factor, the DTS(Oct)₂‐(2T‐DCV‐Hex)₂ (a solubility of 24 mg mL^?1) system in contrast suffers from a poor blend morphology as examined by atomic force morphology and grazing incidence X‐ray scattering measurements, which limit the photovoltaic properties. The charge generation, transport, and recombination dynamics associated with the limited device performance are investigated for both systems. Nongeminate recombination losses in DTS(Oct)₂‐(2T‐DCV‐Hex)₂ system are demonstrated to be significant by combining space charge limited current analysis and light intensity dependence of current–voltage characteristics in combination with photogenerated charge carrier extraction by linearly increasing voltage and transient photovoltage measurements. DTS(Oct)₂‐(2T‐DCV‐Me)₂ in contrast performs nearly ideal with no evidence of nongeminate recombination, space charge effects, or mobility limitation. These results demonstrate the importance of alkyl chain engineering for solution‐processed OSCs based on small molecules as an essential design tool to overcome transport limitations.