Migration between nests in the Australian arid-zone ant Rhytidoponera sp. 12 revealed by DGGE analyses of mitochondrial DNA

Denaturing gradient gel electrophoresis (DGGE) of a PCR-amplified region of the mitochondrial DNA (mtDNA) including a large part of the cytochrome b gene revealed four haplotypes among worker ants from 75 colonies of the queenless ant Rhytidoponera sp. 12. The DGGE results were checked by sequencing examples of the haplotypes; all changes were transitions and two haplotypes differed by only a single substitution. Previous work (e.g. Crozier et al. 1984) showed that intranest relatedness is low for nuclear genes yet neighbouring nests are related; gene flow via winged males appeared the best explanation for this phenomenon. Two mtDNA haplotypes were found in 34.7% of the colonies studied, showing that female movement also occurs between nests. Migration of mated individuals on such a large scale when the number of reproductives is relatively small is unexpected (Crozier & Pamilo 1996). An observed tendency to clumping of the haplotypes is in accordance with the wingless nature of the female dispersers.     

Polymer antimicrobial coatings with embedded fine Cu and Cu salt particles

Many diseases spread due to the bacterial infections, which cause significant economic and personal losses. Contact with infected surfaces is likely to catch infections. Hence, antimicrobial surfaces play an important role in public sectors that can prevent the spreading of disease and infection. Coatings on contact surfaces have been used to provide antimicrobial function. Copper (Cu), as one of the commonly used metals, has long been known to possess germ-killing properties. However, metallic Cu or Cu coatings have not been widely used for the purposes of antimicrobial due to the heavy weight, relatively high cost, limited corrosion resistance and low compatibility of the metal with substrates of non-metallic materials. We have recently developed a polymer-based coating system containing mixtures of fine particles of Cu and Cu salt, which provides excellent antimicrobial properties. The results indicate that the coating with embedded fine Cu salt showed higher antimicrobial property than the coating with only Cu due to the release of more Cu ions. The elimination of 10⁶ bacteria by contacting the polymer-Cu coatings needs 8 h, while contacting with the polymer-CuCl₂ coatings took only 20 min to kill the same amount of bacteria. We have also used transmission electron microscopy and synchrotron infrared microscopy technique to study the degradation of bacterial cell membrane to understand the mechanism of the antimicrobial function of Cu coating.     

Streptolysin‐induced endoplasmic reticulum stress promotes group A Streptococcal host‐associated biofilm formation and necrotising fasciitis

Group A Streptococcus (GAS) is a human pathogen that causes infections ranging from mild to fulminant and life‐threatening. Biofilms have been implicated in acute GAS soft‐tissue infections such as necrotising fasciitis (NF). However, most in vitro models used to study GAS biofilms have been designed to mimic chronic infections and insufficiently recapitulate in vivo conditions along with the host–pathogen interactions that might influence biofilm formation. Here, we establish and characterise an in vitro model of GAS biofilm development on mammalian cells that simulates microcolony formation observed in a mouse model of human NF. We show that on mammalian cells, GAS forms dense aggregates that display hallmark biofilm characteristics including a 3D architecture and enhanced tolerance to antibiotics. In contrast to abiotic‐grown biofilms, host‐associated biofilms require the expression of secreted GAS streptolysins O and S (SLO, SLS) that induce endoplasmic reticulum (ER) stress in the host. In an in vivo mouse model, the streptolysin null mutant is attenuated in both microcolony formation and bacterial spread, but pretreatment of soft‐tissue with an ER stressor restores the ability of the mutant to form wild‐type‐like microcolonies that disseminate throughout the soft tissue. Taken together, we have identified a new role of streptolysin‐driven ER stress in GAS biofilm formation and NF disease progression.     

Polyhydroxyalkanoate (PHA) accumulating bacteria from the gut of higher termite <Emphasis Type="Italic">Macrotermes carbonarius</Emphasis> (Blattodea: Termitidae)

The continuous quest for bacterial strains capable of accumulating polyhydroxyalkanoate (PHA) utilizing cheaper and renewable carbon source prompted us to explore newer and diverse environments like the gut of termites. Among the bacterial strains isolated from the gut of higher termite Macrotermes carbonarius, three strains were found to accumulate PHA, as observed by microscopic studies and PHA production experiments. Among them, strain MC1 with rapid growth and higher PHA accumulation was selected for further studies. API kit-50 CHB and 16S rRNA gene sequence analysis results indicated the strain to have 99% homology with Bacillus megaterium and Bacillus flexus. Bacillus sp. MC1 was able to accumulate PHA during the growth phase utilizing different carbon sources like glucose, fructose, sodium acetate, sodium valerate and 1,4-butanediol. Gas chromatography analysis of the polymer has shown it to be basically composed of poly (3-hydroxybutyrate) (PHB). Growth associated PHB biosynthesis was best in the presence of sodium acetate with 39 wt% after 16 h of cultivation. Though previous studies provided evidence confirming the presence of PHA producing bacteria in termite gut, isolation and characterization of these strains in pure culture has not been documented yet. Presence of other morphotypes in the termite gut with PHA like granular inclusions was evident from the transmission electron microscopy studies. This is a novel report and shows the feasibility of using potent strains capable of utilizing lignocellulosic degradation products as a renewable carbon source for the production of PHA in the future.     

The addition of soil and chitin into Sunda pangolin (Manis javanica) diets affect digestibility,faecal scoring,mean retention time and body weight

Pangolins (Manis spp.) are myrmecophagous mammals with a wild diet of termites and ants. Diets are not yet readily acceptable by all pangolins and lack soil and chitin compared to their wild diet. This study aimed to assess the usefulness of including soil and chitin in pangolin diets by measuring changes in digestibility, food mean retention time, faecal scoring and body weight changes. Two male and two female Sunda pangolins (Manis javanica) from Night Safari (Singapore) were fed their typical gruel-type diets, with soil and chitin added in various amounts throughout 10 different treatments. Diet intake was calculated daily and faecal boluses were collected for digestibility analysis. Chromium oxide was added to the diet to measure mean retention time four times per animal per treatment. Faecal consistency scores were recorded daily where 1 is firm and 5 is liquid. Every animal was weighed weekly. Adding soil or chitin to the diet had various effects on the apparent digestibility of organic matter, crude protein and fiber with little effects on crude fat or calcium. Soil had a general positive influence on organic matter and fiber digestion. The addition of chitin and soil together had the stronger effects. Only at 25% inclusion of soil did the faecal score begin to improve. The overall maintenance energy requirements for adult M. javanica was 79.28 Kcal/kg BW^0.75/day, similar to other myrmecophagous mammals. The usage of soil and chitin in pangolin diets may be helpful in controlling weights while preventing behaviours associated with hunger.     

Deletional types of alpha-thalassaemia in central Java.

The frequency of deletional alpha-thalassaemia in a Javanese population sample (n = 103) was investigated at three restriction sites of the alpha-globin gene (BamHI, BglII and RsaI). The overall gene frequency of alpha+ deletional thalassaemia was found to be very low (0.03). Leftward (-alpha 4.2) and rightward (-alpha 3.7) deletions and triplicated genes were present in equal frequency (0.015 and 0.005, respectively).     

‘Direct PCR’ optimization yields a rapid,cost‐effective,nondestructive and efficient method for obtaining DNA barcodes without DNA extraction

Macroinvertebrates that are collected in large numbers pose major problems in basic and applied biodiversity research: identification to species via morphology is often difficult, slow and/or expensive. DNA barcodes are an attractive alternative or complementary source of information. Unfortunately, obtaining DNA barcodes from specimens requires many steps and thus time and money. Here, we promote a short cut to DNA barcoding, that is, a nondestructive PCR method that skips DNA extraction (‘direct PCR’) and that can be used for a broad range of invertebrate taxa. We demonstrate how direct PCR can be optimized for the larvae and adults of nonbiting midges (Diptera: Chironomidae), a typical invertebrate group that is abundant, contains important bioindicator species, but is difficult to identify based on morphological features. After optimization, direct PCR yields high PCR success rates (>90%), preserves delicate morphological features (e.g. details of genitalia, and larval head capsules) while allowing for the recovery of genomic DNA. We also document that direct PCR can be successfully optimized for a wide range of other invertebrate taxa that need routine barcoding (flies: Culicidae, Drosophilidae, Dolichopodidae, Sepsidae; sea stars: Oreasteridae). Key for obtaining high PCR success rates is optimizing (i) tissue quantity, (ii) body part, (iii) primer pair and (iv) type of Taq polymerase. Unfortunately, not all invertebrates appear suitable because direct PCR has low success rates for other taxa that were tested (e.g. Coleoptera: Dytiscidae, Copepoda, Hymenoptera: Formicidae and Odonata). It appears that the technique is less successful for heavily sclerotized insects and/or those with many exocrine glands.     

Characterization of two subsurface H2-utilizing bacteria, Desulfomicrobium hypogeium sp. nov. and Acetobacterium psammolithicum sp. nov., and their ecological roles.

We examined the relative roles of acetogenic and sulfate-reducing bacteria in H2 consumption in a previously characterized subsurface sandstone ecosystem. Enrichment cultures originally inoculated with ground sandstone material obtained from a Cretaceous formation in central New Mexico were grown with hydrogen in a mineral medium supplemented with 0.02% yeast extract. Sulfate reduction and acetogenesis occurred in these cultures, and the two most abundant organisms carrying out the reactions were isolated. Based on 16S rRNA analysis data and on substrate utilization patterns, these organisms were named Desulfomicrobium hypogeium sp. nov. and Acetobacterium psammolithicum sp. nov. The steady-state H2 concentrations measured in sandstone-sediment slurries (threshold concentration, 5 nM), in pure cultures of sulfate reducers (threshold concentration, 2 nM), and in pure cultures of acetogens (threshold concentrations 195 to 414 nM) suggest that sulfate reduction is the dominant terminal electron-accepting process in the ecosystem examined. In an experiment in which direct competition for H2 between D. hypogeium and A. psammolithicum was examined, sulfate reduction was the dominant process.