Cytochrome <Emphasis Type="Italic">c</Emphasis> Release and Caspase-3 Activation in Retinal Ganglion Cells Following Different Distance of Axotomy of the Optic Nerve in Adult Hamsters

This study examined the relationship between the distance of axotomy and the death of injured retinal ganglion cells (RGCs) in adult hamsters and the relationship of cytochrome c and caspase-3 on the death pathway of RGCs. The left optic nerve (ON) of adult hamsters was transected either at 1 or 3 mm away from the optic disc, and retrogradely labeled with Flurogold on the ON stump. After a predetermined period of postoperative time, the surviving RGCs were counted by retina flat-mount, and the activation of cytochrome c and caspase-3 were investigated by immunohistochemistry. Cell loss was found to be much faster (P < 0.01), more cells with cytochrome c were observed (P < 0.05) and the activation of caspase-3 was earlier when ON was transected 1 mm away from the optic disc than when was transected 3 mm away from the optic disc. Distance of axotomy affects the axotomized cell death rate where more RGCs died when the ON transection was applied closer to the eye. The timing of activation of caspase-3 in the RGCs may be linked to the distance of axotomy.Special issue dedicated to Dr. Lawrence F. Eng     

Rethinking the evolution of extant sub‐Saharan African suids (Suidae,Artiodactyla)

Gongora, J., Cuddahee, R. E., do Nascimento, F. F., Palgrave, C. J., Lowden, S., Ho, S. Y. W., Simond, D., Damayanti, C. S., White, D. J., Tay, W. T., Randi, E., Klingel, H., Rodrigues‐Zarate, C. J., Allen, K., Moran, C. & Larson, G. (2011). Rethinking the evolution of extant sub‐Saharan African suids (Suidae, Artiodactyla). —Zoologica Scripta, 40, 327–335. Although African suids have been of scientific interest for over two centuries, their origin, evolution, phylogeography and phylogenetic relationships remain contentious. There has been a long‐running debate concerning the evolution of pigs and hogs (Suidae), particularly regarding the phylogenetic relationships among extant Eurasian and African species of the subfamily Suinae. To investigate these issues, we analysed the mitochondrial and nuclear DNA sequences of extant genera of Suidae from Eurasia and Africa. Molecular phylogenetic analyses revealed that all extant sub‐Saharan African genera form a monophyletic clade separate from Eurasian suid genera, contradicting previous attempts to resolve the Suidae phylogeny. Two major sub‐Saharan African clades were identified, with Hylochoerus and Phacochoerus grouping together as a sister clade to Potamochoerus. In addition, we find that the ancestors of extant African suids may have evolved separately from the ancestors of modern day Sus and Porcula in Eurasia before they colonised Africa. Our results provide a revision of the intergeneric relationships within the family Suidae.     

The major histocompatability complex (MHC) contains conserved polymorphic genomic sequences that are shuffled by recombination to form ethnic-specific haplotypes

The major histocompatibility complex (MHC) consists of polymorphic frozen blocks (PFBs) that are linked to form megabase haplotypes. These blocks consist of polymorphic sequences and define regions where recombination appears to be inhibited. We have been able to show, using a highly polymorphic sequence centromeric of HLA-B (within the beta block), that PFBs are conserved and contain specific insertions/deletions and substitutions that are the same for individuals with the same MHC haplotype but that differ between at least most different haplotypes. A sequence comparison between ethnic-specific haplotypes shows that these sequences have remained stable and predate the formation of these haplotypes. To determine whether the same conserved block has been involved in the generation of multiple haplotypes, we compared the block typing profiles of different ethnic specific haplotypes. Block typing profiles have previously been shown to be identical in individuals with the same MHC haplotype but, generally, to differ between different haplotypes. It was found that some PFBs are common to more than one haplotype, implying a common ancestry. Subsequently, haplotypes have been generated by the shuffling and exchange of these PFBs. The regions between these PFBs appear to permit the recombination sites and therefore could be expected to exhibit either low polymorphism or a localized ``hotspot.' Received: 20 January 1997 / Accepted: 11 March 1997     

Sensory,motor, and postganglionic sympathetic neurons forming the ulnar and radial nerves of two macaque species: Macaca nemestrina and Macaca fascicularis

The motor, sensory, and postganglionic sympathetic neurons forming the left ulnar and right radial nerves of long-tailed macaques (Macaca fascicularis) and pigtailed macaques (Macaca nemestrina) were localized by the horseradish peroxidase method of tracing neuronal connections. The ulnar and radial motoneurons formed a longitudinal column of variable extent in the lateral part of the ventral horn. In most animals, the ulnar motoneurons extended between the caudal ends of the C7 and T1 segments; the radial motoneurons extended between the rostral level of the C4 and the middle part of T1 segments. Although there were areas of overlap in the spinal distribution of ulnar and radial motoneurons, the ulnar motoneurons were located more dorsally and dorsolaterally than were the radial motoneurons. In most animals, labelled sensory neurons whose axons run with the ulnar nerve occurred in the C8–T4 dorsal root ganglia, and those whose axons run with the radial nerve occurred in the C5–T3 ganglia. The radial sympathetic neurons were distributed in stellate through T7 paravertebral sympathetic ganglia, and the ulnar sympathetic neurons were distributed in stellate through T4 paravertebral sympathetic ganglia. Though the motor, sensory, and sympathetic neurons forming the ulnar and radial nerves had wide segmental distributions, all showed peak frequencies in two segments. The cross-sectional areas of the motor, sensory, and postganglionic sympathetic neurons forming the radial and ulnar nerves were measured in the animal that showed the greatest amount of labelling for each nerve. The ulnar and radial motoneurons had a similar range of sizes, with cross-sectional areas between 120 and 2,160 μm². Most were smaller than 900 μm². The sensory neurons forming the ulnar and radial nerves also displayed a similar range of sizes, measuring between 120 and 3,360 μm² in cross-sectional area. Most neurons measured between 201 and 800 μm². The ulnar sympathetic neurons measured between 120 and 840 μm², and the radial neurons between 120 and 2,120 μm². In both cases, most neurons measured between 120 and 600 μm². The mean cross-sectional area for the radial sympathetic neurons was, however, larger than that for the ulnar sympathetic neurons.     

Quantification of ratios of Bacteria and Archaea in methanogenic microbial community by fluorescence in situ hybridization and fluorescence spectrometry

16S rRNA-targeted oligonucleotide probes for Bacteria (Eub338) and Archaea (Arc915) were used for whole-cell, fluorescence in situ hybridization (FISH) to quantify the ratio of these microbial groups in an anaerobic digester. The quantity of specifically bound (hybridized) probe was measured by fluorescence spectrometry and evaluated by analysing the dissociation curve of the hybrids, by the measurement of the binding with a nonsense probe, and by the competitive inhibition of the binding of the labelled probe by the corresponding unlabelled probe. Specific binding of oligonucleotide probes with the biomass of anaerobes was 40–50% of their total binding. The ratio of Arc915 and Eub338 probes hybridized with rRNAs of the cells in anaerobic sludge was 0.50. Measurement of FISH by fluorescence spectrometry appears to be a suitable method for quantification of the microbial community of anaerobes.     

Migration between nests in the Australian arid-zone ant Rhytidoponera sp. 12 revealed by DGGE analyses of mitochondrial DNA

Denaturing gradient gel electrophoresis (DGGE) of a PCR-amplified region of the mitochondrial DNA (mtDNA) including a large part of the cytochrome b gene revealed four haplotypes among worker ants from 75 colonies of the queenless ant Rhytidoponera sp. 12. The DGGE results were checked by sequencing examples of the haplotypes; all changes were transitions and two haplotypes differed by only a single substitution. Previous work (e.g. Crozier et al. 1984) showed that intranest relatedness is low for nuclear genes yet neighbouring nests are related; gene flow via winged males appeared the best explanation for this phenomenon. Two mtDNA haplotypes were found in 34.7% of the colonies studied, showing that female movement also occurs between nests. Migration of mated individuals on such a large scale when the number of reproductives is relatively small is unexpected (Crozier & Pamilo 1996). An observed tendency to clumping of the haplotypes is in accordance with the wingless nature of the female dispersers.     

Polymer antimicrobial coatings with embedded fine Cu and Cu salt particles

Many diseases spread due to the bacterial infections, which cause significant economic and personal losses. Contact with infected surfaces is likely to catch infections. Hence, antimicrobial surfaces play an important role in public sectors that can prevent the spreading of disease and infection. Coatings on contact surfaces have been used to provide antimicrobial function. Copper (Cu), as one of the commonly used metals, has long been known to possess germ-killing properties. However, metallic Cu or Cu coatings have not been widely used for the purposes of antimicrobial due to the heavy weight, relatively high cost, limited corrosion resistance and low compatibility of the metal with substrates of non-metallic materials. We have recently developed a polymer-based coating system containing mixtures of fine particles of Cu and Cu salt, which provides excellent antimicrobial properties. The results indicate that the coating with embedded fine Cu salt showed higher antimicrobial property than the coating with only Cu due to the release of more Cu ions. The elimination of 10⁶ bacteria by contacting the polymer-Cu coatings needs 8 h, while contacting with the polymer-CuCl₂ coatings took only 20 min to kill the same amount of bacteria. We have also used transmission electron microscopy and synchrotron infrared microscopy technique to study the degradation of bacterial cell membrane to understand the mechanism of the antimicrobial function of Cu coating.     

Polyhydroxyalkanoate (PHA) accumulating bacteria from the gut of higher termite <Emphasis Type="Italic">Macrotermes carbonarius</Emphasis> (Blattodea: Termitidae)

The continuous quest for bacterial strains capable of accumulating polyhydroxyalkanoate (PHA) utilizing cheaper and renewable carbon source prompted us to explore newer and diverse environments like the gut of termites. Among the bacterial strains isolated from the gut of higher termite Macrotermes carbonarius, three strains were found to accumulate PHA, as observed by microscopic studies and PHA production experiments. Among them, strain MC1 with rapid growth and higher PHA accumulation was selected for further studies. API kit-50 CHB and 16S rRNA gene sequence analysis results indicated the strain to have 99% homology with Bacillus megaterium and Bacillus flexus. Bacillus sp. MC1 was able to accumulate PHA during the growth phase utilizing different carbon sources like glucose, fructose, sodium acetate, sodium valerate and 1,4-butanediol. Gas chromatography analysis of the polymer has shown it to be basically composed of poly (3-hydroxybutyrate) (PHB). Growth associated PHB biosynthesis was best in the presence of sodium acetate with 39 wt% after 16 h of cultivation. Though previous studies provided evidence confirming the presence of PHA producing bacteria in termite gut, isolation and characterization of these strains in pure culture has not been documented yet. Presence of other morphotypes in the termite gut with PHA like granular inclusions was evident from the transmission electron microscopy studies. This is a novel report and shows the feasibility of using potent strains capable of utilizing lignocellulosic degradation products as a renewable carbon source for the production of PHA in the future.     

Deletional types of alpha-thalassaemia in central Java.

The frequency of deletional alpha-thalassaemia in a Javanese population sample (n = 103) was investigated at three restriction sites of the alpha-globin gene (BamHI, BglII and RsaI). The overall gene frequency of alpha+ deletional thalassaemia was found to be very low (0.03). Leftward (-alpha 4.2) and rightward (-alpha 3.7) deletions and triplicated genes were present in equal frequency (0.015 and 0.005, respectively).