Inorganic polyphosphates and heavy metal resistance in microorganisms

The mechanisms of heavy metal resistance in microbial cells involve multiple pathways. They include the formation of complexes with specific proteins and other compounds, the excretion from the cells via plasma membrane transporters in case of procaryotes, and the compartmentalization of toxic ions in vacuoles, cell wall and other organelles in case of eukaryotes. The relationship between heavy metal tolerance and inorganic polyphosphate metabolism was demonstrated both in prokaryotic and eukaryotic microorganisms. Polyphosphates, being polyanions, are involved in detoxification of heavy metals through complex formation and compartmentalization. The bacteria and fungi cultivated in the presence of some heavy metal cations contain the enhanced levels of polyphosphate. In bacteria, polyphosphate sequesters heavy metals; some of metal cations stimulate an exopolyphosphatase activity, which releases phosphate from polyphosphates, and MeHPO₄^? ions are then transported out of the cells. In fungi, the overcoming of heavy metal stresses is associated with the accumulation of polyphosphates in cytoplasmic inclusions, vacuoles and cell wall and the formation of cation/polyphosphate complexes. The effects of knockout mutations and overexpression of the genes encoding polyphosphate-metabolizing enzymes on heavy metal resistance are discussed.

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Silvorchis vietnamica (Orchidaceae,Orchidoideae, Vietorchidinae), a new miniature mycotrophic species from southern Vietnam

A second species of Silvorchis, until now considered to be a presumably extinct monotypic genus endemic to western Java has been discovered in southern Vietnam. The species, here named as S. vietnamica, is described and illustrated, with data on its distribution, ecology, phenology and estimated conservation status. A key for identification of the two known species of the genus is also provided. The taxonomic affinities and phylogenetic placement of the newly discovered plant are briefly discussed.     

Synthesizing the role of epigenetics in the response and adaptation of species to climate change in freshwater ecosystems

Freshwater ecosystems are amongst the most threatened ecosystems on Earth. Currently, climate change is one of the most important drivers of freshwater transformation and its effects include changes in the composition, biodiversity and functioning of freshwater ecosystems. Understanding the capacity of freshwater species to tolerate the environmental fluctuations induced by climate change is critical to the development of effective conservation strategies. In the last few years, epigenetic mechanisms were increasingly put forward in this context because of their pivotal role in gene–environment interactions. In addition, the evolutionary role of epigenetically inherited phenotypes is a relatively recent but promising field. Here, we examine and synthesize the impacts of climate change on freshwater ecosystems, exploring the potential role of epigenetic mechanisms in both short‐ and long‐term adaptation of species. Following this wrapping‐up of current evidence, we particularly focused on bringing together the most promising future research avenues towards a better understanding of the effects of climate change on freshwater biodiversity, specifically highlighting potential molecular targets and the most suitable freshwater species for future epigenetic studies in this context.     

Dendrochronological analyses and climatic signals of Alchornea triplinervia in subtropical forest of southern Brazil

The predominance of secondary forest‐species in Brazilian subtropical forests highlights the importance of understanding the ecology of these taxa, and dendrochronology provides valuable information about the growth and climate response of tree species. The wide distribution of Alchornea triplinervia (Spreng.) Mull. Arg. (Euphorbiaceae), and the presence of growth rings in its wood, leds to its selection for this study. Samples were collected from 34 trees growing in rainy dense forest fragments in the cities of Blumenau and Brusque, in southern Brazil, and subjected to standard dendrochronological techniques. The local chronology spanned from 1889 to 2013 and the age of the trees ranged from 32 to 125 years. The mean age was 73 years and annual increment was 1.13 mm year^?1; the diameter and age showed a weak correlation. The results suggest that A. triplinervia growth responded negatively to hot summers and increased rainfall in the previous spring and winter. The high perdiodicity trend characteristic of ENSO activity was reflected in wavelet power spectra of A. triplinervia chronology, affecting positively its growth after strong ENSO events (1970–2009). Negative influences occurred before 1970 during normal ENSO events. Also, there is evidence of the existence of a connection between Pacific and Atlantic sea surface temperatures influencing on tree growth.     

Compatibility and combination of selected bacterial antagonists in the biocontrol of sisal bole rot disease

Sisal (Agave sisalana Perrine ex Engelm; Asparagaceae) bole rot is a devastating disease caused by Aspergillus niger Tiegh, which contributes to the decline of this crop in Brazil. Currently, there are no control measures available, but biocontrol is being investigated as a promising management strategy. Five previously selected bacterial isolates were identified by 16S rRNA sequencing as Paenibacillus sp. 512, Brevibacterium sp. 90 and Bacillus sp. 105, BMH and INV, and tested for their capacity to control bole rot in vitro and in field experiments. Individual bacterial isolates and their combinations significantly inhibited mycelial growth and spore germination of A. niger. In two independent field experiments, the application of isolates 512, 105, 90, INV, and 127 + INV reduced disease incidence to levels varying from 44 to 75%. Although there was no synergistic effect in their combined use, these bacteria have potential to be used against bole rot disease in the field.     

Qualitative modelling of the interplay of inflammatory status and butyrate in the human gut: a hypotheses about robust bi-stability

Background

Gut microbiota interacts with the human gut in multiple ways. Microbiota composition is altered in inflamed gut conditions. Likewise, certain microbial fermentation products as well as the lipopolysaccharides of the outer membrane are examples of microbial products with opposing influences on gut epithelium inflammation status. This system of intricate interactions is known to play a core role in human gut inflammatory diseases. Here, we present and analyse a simplified model of bidirectional interaction between the microbiota and the host: in focus is butyrate as an example for a bacterial fermentation product with anti-inflammatory properties.

Results

We build a dynamical model based on an existing model of inflammatory regulation in gut epithelial cells. Our model introduces both butyrate as a bacterial product which counteracts inflammation, as well as bacterial LPS as a pro-inflammatory bacterial product. Moreover, we propose an extension of this model that also includes a feedback interaction towards bacterial composition. The analysis of these dynamical models shows robust bi-stability driven by butyrate concentrations in the gut. The extended model hints towards a further possible enforcement of the observed bi-stability via alteration of gut bacterial composition. A theoretical perspective on the stability of the described switch-like character is discussed.

Conclusions

Interpreting the results of this qualitative model allows formulating hypotheses about the switch-like character of inflammatory regulation in the gut epithelium, involving bacterial products as constitutive parts of the system. We also speculate about possible explanations for observed bimodal distributions in bacterial compositions in the human gut. The switch-like behaviour of the system proved to be mostly independent of parameter choices. Further implications of the qualitative character of our modeling approach for the robustness of the proposed hypotheses are discussed, as well as the pronounced role of butyrate compared to other inflammatory regulators, especially LPS, NF- κB and cytokines.

     

Site inhomogeneity and exciton delocalization in the photosynthetic antenna

The influence of energy disorder on exciton states of molecular aggregates (the dimer and the circular aggregate) was analyzed. The dipole strength and inhomogeneous line shapes of exciton states were calculated by means of numerical diagonalization of Hamiltonian with diagonal energy disorder without intersite correlation. The disorder degree corresponding to destruction of coherent exciton states was estimated. The circular aggregates were treated as a model of light-harvesting antenna structures of photosynthetic bacteria. It was concluded that the site inhomogeneity typical for LH1 and LH2 complexes of purple bacteria cannot significantly influence the exciton delocalization over the whole antenna.Abbreviations BChl- bacteriochlorophyll - LH1 and LH2- core and peripheral light-harvesting complexes from purple bacteria - RC- reaction center     

The Rab Protein Family: Genetic Mapping of Six Rab Genes in the Mouse

Rab proteins constitute a family of GTP-binding proteins that are located in distinct intracellular compartments and play a role in the regulation of vesicular trafficking. Yeast mutations in Rab gene homologs cause defects in vesicular transport similar to those observed in beige (bg) mice. To investigate Rab genes as candidates for mouse mutations characterized by defects in vesicular trafficking, we utilized an intersubspecific backcross [C57BL/6J-bg^J × (C57BL/6J-bg^J × CAST/Ei)F₁] segregating for the bg locus. Restriction fragment length polymorphisms (RFLPs) were obtained through Southern hybridization of F₁ and C57BL/6J chromosomal DNA with the coding sequences of Rab genes. These RFLPs and 12 polymorphic microsatellites were used to determine the segregation of the Rab genes in 93 backcross mice. Rab4a, Rab4b, Rab7, Rab10, Rab22, and Rab24 were localized on mouse chromosomes 8, 7, 9, 12, 2, and 13, respectively. Although the results exclude these loci as candidates for bg , they demonstrate a wide dispersion of Rab genes throughout the mouse genome and reveal that Rab4b and Rab24 are possible candidates for the mouse mutations reduced pigmentation (rp) and purkinje cell degeneration (pcd), respectively.