Electrophoretic and cytological evidence for genetic heterogeneity and the hybrid origin ofAthyrium oblitescens

Athyrium oblitescens, a putative hybrid species, was examined electrophoretically and cytologically to clarify its origin. Allozyme data showed thatA. oblitescens consisted of at least three allozyme types, designated Type C, Type O and Type W. Genotypic compositions of Type C and Type W suggested that they were derived from independent hybridizations betweenA. otophorum andA. clivicola and betweenA. otophorum andA. wardii, respectively. Contrary to previous reports of tetraploidy inA. oblitescens and its hypothesized parent species, cytological observation revealed that Type C and Type W were both hexaploids. Possible pathways for the origin of these hexaploids are proposed. Type O was not genetically distinct fromA. otophorum by either electrophoretic or cytological analyses, and thus there was no evidence of hybrid origin.     

Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis.

The distinctive features of plant organs are primarily determined by organ-specific gene expression. We analyzed the expression specificity of 8809 genes in 7 organs of Arabidopsis using a cDNA macroarray system. Using relative expression (RE) values between organs, many known and unknown genes specifically expressed in each organ were identified. We also analyzed the organ specificity of various gene groups using the GRE (group relative expression) value, the average of the REs of all genes in a group. Consequently, we found that many gene groups even ribosomal protein genes, have strong organ-specific expression. Clustering of the expression profiles revealed that the 8809 genes were classified into 9 major categories. Although 3451 genes were clustered into the largest category, which showed constitutive gene expression, 266 and 1005 genes were found to be root- and silique-specific genes, respectively. By this clustering, particular gene groups which showed multi-organ-specific expression profiles, such as bud-flower-specific, stem-silique-specific or bud-flower-root-specific profiles, could be effectively identified. From these results, major features of plant organs could be characterized by their distinct profiles of global gene expression. These data of organ-specific gene expression are available at our web site: Arabidopsis thaliana Tissue-Specific Expression Database, ATTED (http://www.atted.bio.titech.ac.jp/).     

Nature of photochemical reactions in chromatophores ofChromatium D III. Heterogeneity of the photosynthetic units

The effect of isooctane extraction on photooxidation ofc-type cytochromes was investigated inChromatium chromatophores.Photooxidation of cytochromec-555 was not affected by isooctane-extraction except that the dark recovery was accelerated. Photooxidation of cytochromec-552 was abolished by thorough extraction of ubiquinone-7, but the quantum yield of the cytochrome photooxidation remained unchanged until 90|X% of the total ubiquinone was extracted. The photooxidation of cytochromec-552 was recovered by the addition of ubiquinone-7 but not by menaquinone. A dark incubation of sufficient length was needed for maximal quantum yield of cytochromec-555 photooxidation in the presence of 30 mM ascorbate.It is proposed that there are two types of photosynthetic units (or associations of molecules involved in the primary redox reactions) inChromatium chromatophores. The combinations of primary electron donor-reaction center chlorophyll-primary electron acceptor may be cytochromec-552-P890-ubiquinone in one type and cytochromec-555-P890-X in another.     

A new light-induced absorbance change at 561 nm in chloroplasts of green alga, Bryopsis maxima

A new light-induced absorbance change having a maximum at 561nm was discovered in the thalli, as well as in isolated chloroplastsof a green alga, Bryopsis maxima Okamura. Another simultaneous change also occurred at 515 nm. The magnitudeof the 561 nm change was several-fold larger than that at 515nm and much larger than could be explained by an oxidation-reductionchange in cytochromes contained in chloroplasts. There was noabsorbance change in the Soret region that may be correlatedto the 561 nm change. Both 561 and 515 nm changes showed a spike-liketime course pattern, both having a half-rise time of about 20msec. Effects of inhibitors and uncouplers such as DCMU, Cl-CCPand gramicidin J on the absorbance change were also similarat 561 and at 515 nm. We inferred that the 561 nm change is related to photophosphorylationand possibly to the membrane potential in a way similar to the515 nm change. (Received March 27, 1974; )     

Properties of the Cytochrome c Oxidase Activity of Cytochrome b561 from Photoanaerobically Grown Rhodopseudomonas sphaeroides

Cytochrome b₅₆₁ from Rhodopseudomonas sphaeroides had cytochromec (c2) oxidase activity and a pH optimum at 6.0 for this activity.The activity was affected by the ionic strength of the reactionmixture. The apparent K_m and maximal velocity (V_max) valuesin the absence of addea salts were 14 µM and 120 nmoloxidized per min per mg protein for horse heart cytochrome c.Reduced horse heart cytochrome c was reoxidized in first-orderkinetics by this cytochrome b₅₆₁. The specific activity was0.7 s^–1 per mg protein at 20°C at the concentrationof 30 µMM cytochrome c. Activity was inhibited by KCN and NaN₃, but not by antimycin.The addition of a low concentration of KCN to the cytochromeb₅₆₁ produced a change in the absorption spectrum, evidencethat KCN interacts with the heme moiety of cytochrome b₅₆₁.Results of this and preceeding studies show that the cytochromeoxidase (cytochrome "o") described earlier (Sasaki et al. 1970)is cytochrome b₅₆₁. (Received May 16, 1983; Accepted September 8, 1983)     

Isolation and properties of membrane-bound cytochrome c-552 from photosynthetic bacterium Chromatium vinosum

A membrane-bound cytochrome c-552 was isolated and purified from the photosynthetic bacterium Chromatium vinosum by treatment with sodium cholate, sodium deoxycholate and bacterial alkaline protease followed by gel filtration. The purified cytochrome c-552, which may have been modified by the protease treatment, was electrophoretically homogeneous. Its minimal molecular weight was estimated to be 19 and 20 kdaltons, respectively by SDS polyacrylamide gel electrophoresis and by gel filtration on Sephadex G-100. Cytochrome c-552 showed the absorption maxima at 419, 523 and 552 nm in the reduced form. Reduced-minus-oxidized difference millimolar absorption coefficient was 10.6 for the wavelength pair, 552 minus 540 nm. The midpoint potential at pH 8.0 was ?130 mV. The polarity in the amino acid composition of cytochrome c-552 was 40.1% and reflected its hydrophobicity. The solubilized cytochrome c-552 was shown to be a different entity from the soluble flavocytochrome c-552 in several respects.