A cryptic contact zone between divergent mitochondrial DNA lineages in southwestern North America supports past introgressive hybridization in the yellow‐rumped warbler complex (Aves: Dendroica coronata)

Using genetic data to study the process of population divergence is central to understanding speciation, yet distinguishing between recent divergence and introgressive hybridization is challenging. In a previous study on the phylogeography of the yellow‐rumped warbler complex using mitochondrial (mt)DNA data, we reported limited sequence divergence and a lack of reciprocal monophyly between myrtle and Audubon's warblers (Dendroica coronata and Dendroica auduboni, respectively), suggesting very recent isolation. In the present study, we report the results obtained from a subsequent sampling of Audubon's warbler in Arizona and Utah (‘memorabilis’ race), which shows that, although this taxon is similar to auduboni in plumage colour, most memorabilis individuals sampled (93%) carry haplotypes that belong to the divergent black‐fronted warbler lineage (Dendroica nigrifrons) of Mexico. Furthermore, the auduboni and nigrifrons lineages mix in southern Utah at a narrow, yet apparently ‘cryptic’ contact zone. Newly‐available evidence from nuclear markers indicating marked differentiation between auduboni and coronata has focused attention on the possibility of mtDNA introgression in the absence of nuclear gene flow, and the results of the present study are consistent with the hypothesis that the mtDNA of auduboni was indeed historically introgressed from the coronata lineage. Analysis of morphological traits shows that memorabilis is significantly differentiated from auduboni and nigrifrons in some traits, yet is overall intermediate between the two, which is consistent with a shared common ancestor for the auduboni/memorabilis/nigrifrons group. The striking, unexpected mtDNA pattern reported in the present study reveals a complex evolutionary history of the yellow‐rumped warbler complex, and cautions against the exclusive use of mtDNA to infer evolutionary relationships. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 103 , 696–706.     

Gall morpho-type corresponds to separate species of gall-inducing thrips (Thysanoptera: Phlaeothripidae)

Kladothrips rugosus Froggatt has previously been considered a single polyphagous species that, in Australia, induces galls on several species of Acacia , with the gall structure varying both within and between hosts. On Acacia papyrocarpa , two types of gall are induced by this species, one with the surface ridged but the other with the surface smooth. Using sequence data from cytochrome oxidase subunit I (CO I ) and elongation factor-1 alpha gene fragments, we show that the thrips inducing these two gall-types are genetically distinct and comprise separate lineages. Uncorrected ' p ' distances calculated from CO I gene fragments were 0.000 and 0.006 within lineages and 0.074 and 0.078 between lineages. The between-lineage distances are comparable with distances between morphologically distinct species of other Acacia gall-thrips. Re-examination of adult thrips from the two gall types revealed consistent differences in body colour, as well as in body sculpture. Together with observations on gall founding behaviour, these data indicate that the thrips populations in the two gall types on A. papyrocarpa are reproductively isolated and should be considered as separate species. The form from smooth galls on A. papyrocarpa is therefore described as Kladothrips nicolsoni sp. nov. , although the form from ridged galls can be considered only as ' K. rugosus agg.'. These inconsistencies in the taxonomic status of the various units within the K. rugosus species complex are discussed, although most of them cannot be distinguished morphologically at present.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 88 , 555–563.     

Drug‐Resistant Human Staphylococcus Aureus in Sanctuary Apes Pose a Threat to Endangered Wild Ape Populations

Reintroduction of sanctuary apes to natural habitat is considered an important tool for conservation; however, reintroduction has the potential to endanger resident wild apes through the introduction of human pathogens. We found a high prevalence of drug‐resistant, human‐associated lineages of Staphylococcus aureus in sanctuary chimpanzees (Pan troglodytes) from Zambia and Uganda. This pathogen is associated with skin and soft tissue diseases and severe invasive infections (i.e. pneumonia and septicemia). Colonization by this bacterium is difficult to clear due to frequent recolonization. In addition to its pathogenic potential, human‐related S. aureus can serve as an indicator organism for the transmission of other potential pathogens like pneumococci or mycobacteria. Plans to reintroduce sanctuary apes should be reevaluated in light of the high risk of introducing human‐adapted S. aureus into wild ape populations where treatment is impossible. Am. J. Primatol. 74:1071‐1075, 2012. © 2012 Wiley Periodicals, Inc.     

Quantifying soil organic carbon in complex landscapes: an example of grassland undergoing encroachment of woody plants

The invasion of woody plants into grass‐dominated ecosystems has occurred worldwide during the past century with potentially significant impacts on soil organic carbon (SOC) storage, ecosystem carbon sequestration and global climate warming. To date, most studies of tree and shrub encroachment impacts on SOC have been conducted at small scales and results are equivocal. To quantify the effects of woody plant proliferation on SOC at broad spatial scales and to potentially resolve inconsistencies reported from studies conducted at fine spatial scales, information regarding spatial variability and uncertainty of SOC is essential. We used sequential indicator simulation (SIS) to quantify spatial uncertainty of SOC in a grassland undergoing shrub encroachment in the Southern Great Plains, USA. Results showed that both SOC pool size and its spatial uncertainty increased with the development of woody communities in grasslands. Higher uncertainty of SOC in new shrub‐dominated communities may be the result of their relatively recent development, their more complex above‐ and belowground architecture, stronger within‐community gradients, and a greater degree of faunal disturbance. Simulations of alternative sampling designs demonstrated the effects of spatial uncertainty on the accuracy of SOC estimates and enabled us to evaluate the efficiency of sampling strategies aimed at quantifying landscape‐scale SOC pools. An approach combining stratified random sampling with unequal point densities and transect sampling of landscape elements exhibiting strong internal gradients yielded the best estimates. Complete random sampling was less effective and required much higher sampling densities. Results provide novel insights into spatial uncertainty of SOC and its effects on estimates of carbon sequestration in terrestrial ecosystem and suggest effective protocol for the estimating of soil attributes in landscapes with complex vegetation patterns.     

The development of an Early Ordovician hard ground community in response to rapid sea-floor calcite precipitation

The Kanosh Shale (Upper Arenig, Lower Ordovician) of west-central Utah. USA. contains abundant carbonate hardgrounds and one of the earliest diverse hardground communities. The hardgrounds were formed through a combination of processes including the development of early digenetic nodules in clay sediments which were exhumed and concentrated as lags by storms. These cobble deposits. together with plentiful biogenic metrical. were cemented by inorganically precipitated calcite on the sea floor. forming intraformational conglomerate hardgrounds. Echinoderms may have -played a critical role in the development of hardground faunas since their disarticulated calcite ossicles were rapidly cemented by syntaxial overgrowths. forming additional cobbles and hardgrounds. The echinoderms thus may have taphonomically facilitated the development of some of the hard substrates they required. A significant portion of the hardground cements may have been derived from the early dissolution of aragonitic mollusk shells. Kanosh hardground species include the earliest bryozoans recorded on hardgrounds and large numbers of stemmed echinoderms. primarily rhipidocystid cocrinoids. Bryozoans and echinoderms covered nearly equal areas of the hardground surfaces. and there was a distinct polarization between species which preferred the upper. exposed portions of the hardgrounds and others which were most common on undercut. overhang surfaces. The Kanosh Shale hardground fossils combine elements of Late Cambrian assemblages and Middle Ordovician faunas, thus confirming predicted trends in hardground community evolution. especially the replacement of cocrinoids by bryozoans and. to a lesser extent, by other stemmed echinoderms, especially crinoids. The Kanosh community marks the transition from the Cambrian Fauna to The Paleozoic Fauna in The hardground ecosystem. *Carbonate hardgrounds, aragonite dissolution, calcite cement, Echinodermara, Trepostomata, Nicholsonclla. Dianulites. Porifpra. taphonomic facilitation, Utah. Pogonip Group, Kanosh Shale. Ordovician.     

Characterization of Plant Epidermal Lens Effects by a Surface Replica Technique

Optical replicas of leaf surfaces were made for characterizingthe lens properties of individual epidermal cells. Using a dentallatex, moulds were made of leaf surfaces and subsequently usedto produce agarose replicas. The replicas focused light in amanner similar to intact epidermal cells and it was possibleto measure both focal lengths and intensifications within leafreplicas of Thermopsis montana, Mahonia repens, and Smilacinastellata which had epidermal cells of different diameter. Focallengths ranged from 74—130 µm which indicated thatlight was concentrated within the underlying photosynthetictissues of these leaves. Focal intensifications were measuredsensiometrically and were 1.5 for T. montana and 2-6 for theother species. These values compare favourably with calculatedfocal lengths and measurements taken from isolated epidermallayers. The results indicate that the epidermis can concentratelight within the leaf to amounts well in excess of ambient light.Furthermore, the replicas faithfully reproduced fine anatomicaldetails from a wide variety of leaves and they provide a non-destructiveway to reproduce surface characteristics for anatomical andphysiological studies.     

TRACE FOSSILS OF CICADAS IN THE CENOZOIC OF CENTRAL PATAGONIA, ARGENTINA

Abstract:  Hemispherical pan or dish-shaped trace fossils from the Cenozoic of the Central Patagonia are attributed to the burrowing action of cicadas. A new ichnotaxon, Feoichnus challa igen. et isp. nov. is characterized by its hemispherical shape, mostly subvertical orientation, smoothed internal lining showing knobbly surface texture, and rough and irregular external surface devoid of ornamentation. The wall is composed of a lining plus a layer of soil material consolidated passively by cicada excretions. In other specimens the wall shows a repetition of linings and soil layers reflecting changes in the position of the chambers. Grooves, which represent traces of roots originally related to the feeding activities of cicada nymphs, are located in the wall of many specimens of F. challa . These grooves are subvertical to subhorizontal and show smooth surfaces with longitudinal striations. The cicadan origin of these traces is supported by comparison of the fossils to modern cicada nymph chambers and by laboratory experiments. The most significant characters that emerged from the comparison are the differential preservation of the basal part of the chambers, the interior lining with similar surface texture, and the presence of root traces in the wall and in the interior of the chamber. Additional records of F. challa from the Cretaceous–Pliocene of the USA, the Oligocene of Ethiopia, and the Miocene of the United Arab Emirates and Kenya complete the current information yielded by the known body fossil record to help understand the evolutionary history of cicadas.