Cloning and nucleotide sequence of the isoamylase gene from Pseudomonas amyloderamosa SB-15

The gene (iam) coding for isoamylase (glycogen 6-glucanohydrolase) of Pseudomonas amyloderamosa SB-15 was cloned. Its nucleotide sequence contained an open reading frame of 2313 nucleotides (771 amino acids) encoding a precursor of secreted isoamylase. The precursor contained a signal peptide of 26 amino acid residues at its amino terminus and three regions homologous with those conserved in alpha-amylases (1,4-alpha-D-glucan 4-glucanohydrolase) of species ranging from prokaryotes to eukaryotes. These homologous regions were also found in another debranching enzyme, pullulanase (pullulan 6-glucanohydrolase) from Klebsiella aerogenes. Sequences of the isoamylase also showed significant homology with those between positions 300 and the carboxyl terminus of pullulanase. The regions required for the specificity of isoamylase were discussed on the basis of a comparison of its amino acid sequence with those of alpha-amylases, cyclomaltodextrin glucanotransferases, and pullulanase.     

A TAXONOMIST'S VIEW OF THE COLI-AEROGENES BACTERIA

SUMMARY: Examples are given of different names that might be applied to the same organisms when the scheme of classification is changed. In particular, the classification of the Coli-Aerogenes (1956) Sub-Committee of the Society for Applied Bacteriology and the proposed nomenclature are discussed.     

Competition for sulphur in a grass-clover association

Summary A 3 × 3 factorial experiment with nitrogen and sulphur fertilizers was carried out on a grass-clover association in an area where there is little if any cyclic return of sulphur. In the absence of sulphur, grass took up 98 per cent of the total uptake of sulphur, and nitrogen fixation by associated clover was negligible. In the absence of fertilizer nitrogen, dressings of sulphur as gypsum stimulated clover growth; at a low rate of application of sulphur, nitrogen fertilizer increased grass growth and clover was suppressed. This suppression was largely overcome with a higher dressing of sulphur. Sulphur therefore must be added to the group of elements (phosphorus, nitrogen and potassium) for which grass may compete intensely when grown with clover and when nitrogen fertilizers are applied to a grass-clover association adequate supplies of sulphur must be assured in order to minimise suppression of clover. Sulphate of ammonia may stimulate clover growth under these conditions. Solubility of gypsum was low in a dry season and residual effects were pronounced.     

Isolation of adenosine 5'-diphosphate-L-glycero-D-mannoheptose, the assumed substrate of heptose transferase(s), from Salmonella minnesota R595 and Shigella sonnei Re mutants

From heptose transferase-less Re mutants of Salmonella minnesota and Shigella sonnei, a mixture of nucleotide-linked heptoses was isolated. After paper chromatography in different solvent systems, ADP derivatives of D-glycero-D-mannoheptose and L-glycero-D-mannoheptose could be isolated in pure form. The structure of ADP-L-glycero-D-mannoheptose was verified by analytical methods and by transformation of ADP-D-glycero-D-mannoheptose with ADP-D-glycero-D-mannoheptose-6-epimerase.     

Tau, sigma, and delta. A family of repeated elements in yeast

We report here the isolation and structure of a new repeated DNA element, tau. This element, from Saccharomyces cerevisiae, is 371 base pairs long and is flanked on either end by the same invertedly repeated sequence found at the ends of some Ty and sigma elements in yeast, copia elements in Drosophila and spleen necrosis virus. The tau inverted repeats are themselves flanked by a 5-base pair directly repeated genomic sequence that is present only once in a cognate tau-allele. These structural characteristics, the presence of multiple copies of tau in the genome, and the isolation of tau+ and tau- allelic pairs suggest that tau may be capable of transposition either alone or in association with some larger element. Detailed sequence analysis of the tau, sigma, and delta elements revealed that all three contain significant regions of homology, suggesting that they are probably members of a single family derived from a common progenitor.