Water salinity effects on embryogenesis of the lesser sandeel,Ammodytes tobianus (Linnaeus, 1758)

Effects of water salinity (3.0–9.0 PSU) on the duration and outcome of embryogenesis in the lesser sandeel (Ammodytes tobianus (L.) as well as on survival, size, and malformation rate of the newly hatched larvae were followed, based on observations involving equipment consisting of a microscope and still and digital cameras. The images obtained and measurements of egg and larval dimensions were analyzed using the NIS elements Br. computer software package. The lowest salinity tested (3.0 PSU), similar to that in the inshore Baltic Sea waters native for the species studied, produced a lower fertilization rate and resulted in extended embryogenesis, reduced embryo survival, changes in the hatch size, and increased larval malformation rate. The high-end salinity (7.5–9.0 PSU), higher than that prevailing in the species’s spawning grounds in the Baltic Sea, resulted — similarly to the low-end salinity — in disturbed development and growth of the embryos.     

The effect of EDTA and EDDS on lead uptake and localization in hydroponically grown Pisum sativum L.

Pisum sativum plants were treated for 3 days with an aqueous solution of 100 μM Pb(NO₃)₂ or with a mixture of lead nitrate and ethylenediaminetetraacetic acid (EDTA) or [S,S]-ethylenediaminedisuccinic acid (EDDS) at equimolar concentrations. Lead decline from the incubation media and its accumulation and localization at the morphological and ultrastructural levels as well as plant growth parameters (root growth, root and shoot dry weight) were estimated after 1 and 3 days of treatment. The tested chelators, especially EDTA, significantly diminished Pb uptake by plants as compared to the lead nitrate-treated material. Simultaneously, EDTA significantly enhanced Pb translocation from roots to shoots. In the presence of both chelates, plant growth parameters remained considerably higher than in the case of uncomplexed Pb. Considerable differences between the tested chelators were visible in Pb localization both at the morphological and ultrastructural level. In Pb+EDTA-treated roots, lead was mainly located in the apical parts, while in Pb+EDDS-exposed material Pb was evenly distributed along the whole root length. Transmission electron microscopy and EDS analysis revealed that in meristematic cells of the roots incubated in Pb+EDTA, large electron-dense lead deposits were located in vacuoles and small granules were rarely noticed in cell walls or cytoplasm, while after Pb+EDDS treatment metal deposits were restricted to the border between plasmalemma and cell wall. Such results imply different ways of transport of those complexed Pb forms.     

Small things are important: the value of singular point elements for birds in agricultural landscapes

Farmland birds belong to the most endangered group of vertebrates in Europe. They are an important component of farmland biodiversity considering the numerous functions they perform (e.g. seed dispersal, improving germination, increasing gene flow, nutrient recycling, and pest control). Therefore, their decline imposes substantial risks on agricultural ecosystems. In general, farmland bird conservation includes land-use and management alterations leading to less-intensive farming and land-sparing for breeding habitats (e.g. agri-environment-climate schemes, and organic farming). However, theoretical concepts describing farmland biodiversity maintenance and applied conservation measures usually ignore the role of singular, often very small, natural or man-made elements in an agricultural landscape. These elements play a role in the populations of certain species, their biology and in the general species richness of farmland. Furthermore, the importance of these elements has never been empirically tested, which means that conservationists and practitioners are not aware of their measurable value for birds. Herein, we define and identify singular point elements in the agricultural landscape (SPELs) which are potentially important for breeding farmland birds. We also describe each SPEL and evaluate its importance for birds in farmland based on a systematic review of the available literature. Using a horizon-scanning technique, we then polled field ornithologists about their personal observations of birds in relation to SPELs and the evaluation of the potential roles of such structures for birds. We identified 17 SPELs that vary in naturalness and age: singular trees, singular shrubs, erratic boulders, puddles, electricity pylons, wind turbines, spiritual sites, hunting platforms, fence and border posts, wells, road signs, scarecrows, piles of manure, piles of brushwood/branches, piles of stones/debris, piles of lime, and haystacks. Analysis of the literature revealed knowledge gaps, because some SPELs are frequently mentioned in ecological studies (e.g. trees, shrubs, pylons), but others such as spiritual sites, stones, hunting platforms, wells, road signs, or piles of lime are ignored. Despite the fact that some authors incorporate the effects of some SPELs in their studies, little research to date has aimed to assess the impact of various SPELs on farmland bird species numbers and distribution. Horizon scanning revealed that ornithologists often observe birds on various SPELs and thus, attribute to SPELs many functions that are important for maintaining bird populations. Horizon scanning also highlighted the importance of SPELs for many declining bird species and suggested possible mitigation of negative changes in the agricultural landscape by retaining SPELs within fields. We suggest that a better understanding of the role of SPELs for farmland birds is required. We also recommend that SPELs are considered as a potential tool for the conservation of birds, and existing conservation programs such as agri-environment-climate schemes and organic farming should be updated accordingly. Finally, we suggest that SPELs are included in predictive models that evaluate habitat suitability for farmland biodiversity.     

Origin and paleoecology of Middle Jurassic hiatus concretions from Poland

Bored and encrusted carbonate concretions, termed hiatus concretions, coming from the Middle Jurassic (Upper Bajocian and Bathonian) siliciclastics of the Polish Jura, south-central Poland, have been subjected to detailed paleoecological investigation for the first time. The concretions possess variable morphology and bear distinct traces of bioerosion and encrustation as a result of exhumation on the sea floor during intervals of low sedimentation and/or erosion. The borings are dominated by Gastrochaenolites and Entobia. Epilithozoans, represented by at least 26 taxa, are dominated by sabellid/serpulid worm tubes and bryozoans, while sponges and corals are minor. No relationship between the concretion size and the number of encrusters has been found, suggesting that concretion size was not the primary factor controlling diversity. Stable isotope analyses and the presence of crustacean scratch marks and Rhizocorallium traces on many of the hiatus concretions indicate that they formed just below the sediment–water interface, within the sulfate reduction zone. Moreover, crustacean activities may have been a prelude to their origin, as shapes of many concretions closely resemble thalassinoidean burrow systems. It is also possible that crustacean activity around the concretions promoted their exhumation by loosening the surrounding soft sediment. The presence of borings and encrusters on different concretion surfaces, as well as truncated borings and a number of abraded epilithozoans, indicate that after the concretions were exhumed they were repeatedly overturned and moved on the sea floor, probably due to episodic storm-related bottom currents in shallow subtidal environment.     

Conformational studies of vasopressin and mesotocin using NMR spectroscopy and molecular modelling methods. Part I: Studies in water.

Arginine vasopressin (AVP) and mesotocin (MT) belong to the neurohypophyseal hormone family. The former plays a very important role in the control of urine concentration and the blood pressure in mammals, whereas the latter stimulates uterine concentration and initiates birth in amphibians, marsupials, wallabies, birds, and fishes. Analysis of their 3D structure could be helpful for understanding the evolutionary relationship between all vasopressin- and oxytocin-like hormones. In addition, it allows design of new analogs with appropriate biological activity for humans and animals. In this paper, we present the conformational studies of AVP and MT, under the aqueous conditions. In our investigations, we used 2D NMR spectroscopy and time-averaged molecular dynamics calculations in explicit water. Our studies have shown that both peptides, despite displaying a high sequence homology, differ from each other with regard to the three-dimensional structure. They are in conformational equilibrium as a result of the cis/trans isomerization across the Cys(6)-Pro(7) peptide bond. Both peptides form beta-turns in their cyclic part, wherein the C-terminal fragment of MT is bent, whereas that of AVP is extended.     

Severe manifestation of Leber's hereditary optic neuropathy due to 11778G>A mtDNA mutation in a female with hypoestrogenism due to Perrault syndrome

Perrault syndrome (PS) is a rare autosomal recessive condition with ovarian dysgenesis, hearing deficit and neurological abnormalities in female patients. The molecular basis of the syndrome is heterogeneous, mutations in the HSD17B4 gene have been identified in one family and mutations in the HARS2 gene have been found in another one.We have excluded pathogenic changes in the HSD17B4 gene and in the HARS2 gene by a direct sequencing of all coding exons in a female with clinical hallmarks of PS, ataxia and mild mental retardation.In addition, the patient suffers from severe Leber's hereditary optic neuropathy (LHON) due to 11778G>A mtDNA mutation.This case is the first reported patient with PS and LHON. Possible influence of hypoestrogenism on the manifestation of optic neuropathy in this patient is discussed in the context of recent findings concerning the crucial role of estrogens in supporting the vision capacity in LHON-related mtDNA mutation carriers.     

Modification of the Lipid Phase of Biological and Model Membranes by Bilberry Leaf Extract

The leaves of blueberry are a rich source of polyphenols, chlorogenic acid (CGA) being the dominant constituent. It exerts beneficial health effects on living organisms. However, the mechanism of its interaction with biological systems at the molecular and cell level is not yet fully known. For this reason, biophysical studies were undertaken to investigate the effect of the polyphenolic compounds contained in the extract on the physical properties of cells, biological and model lipid membranes; and to assess the extract’s antioxidant activity in relation to the erythrocyte membrane and membrane lipids extracted from erythrocyte membranes. The hemolytic studies have shown that extract exert no destructive effect on the erythrocyte membrane, but make it more resistant to changes in tonicity of the medium. The studies of shapes of erythrocytes and of changes induced by the extract in different areas of the membrane showed that the compounds bind mainly to the outer lipid monolayer of the membrane. The biological activity of the polyphenolic compounds present in the blueberry leaf extract consists primarily in protecting the membranes against the harmful effects of free radicals, probably owing to a barrier that they form on the surface of the membrane. In addition, the close link demonstrated between the antioxidant activity of the extract and the activity of CGA means that the extract may, at appropriately selected high concentrations, be used as a widely available, cheap CGA substitute, in those pharmacological preparations where CGA has long been used, without the risk of side effects.     

Regulation of the unfolded protein response by microRNAs

The unfolded protein response (UPR) is an adaptive response to the stress that is caused by an accumulation of misfolded proteins in the lumen of the endoplasmic reticulum (ER). It is an important component of cellular homeostasis. During ER stress, the UPR increases the protein-folding capacity of the endoplasmic reticulum to relieve the stress. Failure to recover leads to apoptosis. Specific cellular mechanisms are required for the cellular recovery phase after UPR activation. Using bioinformatics tools, we identified a number of microRNAs that are predicted to decrease the mRNA expression levels for a number of critical components of the UPR. In this review, we discuss the potential role of microRNAs as key regulators of this pathway and describe how microRNAs may play an essential role in turning off the UPR after the stress has subsided.     

Elucidation of direct competition and allosteric modulation of small‐molecular‐weight protein ligands using surface plasmon resonance methods

The present work introduces a surface plasmon resonance‐based method for the discrimination of direct competition and allosteric effects that occur in ternary systems comprising a receptor protein and two small‐molecular‐weight ligands that bind to it. Fatty acid binding protein 4, fructose‐1,6‐bisphosphatase and human serum albumin were used as model receptor molecules to demonstrate the performance of the method. For each of the receptor molecules, pairs of ligand molecules were selected for which either direct competition or an allosteric effect had already been determined by other methods. The method of discrimination introduced here is based on the surface plasmon resonance responses observed at equilibrium when an immobilized receptor protein is brought into contact with binary mixtures of interacting ligands. These experimentally determined responses are compared with the responses calculated using a theoretical model that considers both direct competition and allosteric ligand interaction modes. This study demonstrates that the allosteric ternary complex model, which enables calculation of the fractional occupancy of the protein by each ligand in such ternary systems, is well suited for the theoretical calculation of these types of responses. For all of the ternary systems considered in this work, the experimental and calculated responses in the chosen concentration ratio range were identical within a five‐σ confidence interval when the calculations considered the correct interaction mode of the ligands (direct competition or different types of allosteric regulation), and in case of allosteric modulation, also the correct strength of this effect. This study also demonstrates that the allosteric ternary complex model‐based calculations are well suited to predict the ideal concentration ratio range or even single concentration ratios that can serve as hot spots for discrimination, and such hot spots can drastically reduce the numbers of measurements needed for discrimination between direct competition and distinct modulation modes (neutral, positive or negative allostery). Copyright © 2015 John Wiley & Sons, Ltd.