Complex patterns of hybridization between exotic and native North American poplar species

? Premise of the study: Poplars and their hybrids are seen as important candidates for bioenergy initiatives. However, many concerns have been raised about large-scale plantations of new poplar cultivars. The deployment of such plants with novel traits brings the risk of potential spread of novel genome regions (including exotic genes, transgenes, or other heritable modifications) into natural populations of related species. The possibility of introgression is especially high in poplars because reproductive barriers between species are weak. Knowledge of the frequency of hybridization between cultivated trees and natural populations is one important step in the risk-assessment process. ? Methods: We studied the rate of spontaneous hybridization from two sexually mature poplar plantations into adjacent natural populations of Populus deltoides and P. balsamifera. The two plantations, both in eastern Canada, contain many different complex hybrid clones with components from exotic species, mostly P. nigra, P. trichocarpa, and P. maximowiczii. We analyzed 12 species-specific single nucleotide polymorphisms from six different genes in 5373 offspring sampled from the natural populations. ? Results: Contributions from all three exotics were found in the offspring, confirming low reproductive barriers among poplar species in these sections. The frequency of hybrid offspring varied among pollen donors, recipient populations, and years. ? Conclusions: The remarkably high rate of hybridization that was found in the smallest natural population sampled suggests that small peripheral populations carry a higher risk of introgression. These results could be used as a starting point for developing regulatory guidelines for the introduction of plants with novel traits.     

Phylogeographic structure of jack pine (Pinus banksiana; Pinaceae) supports the existence of a coastal glacial refugium in northeastern North America

? Premise of the study: The genetic structure of jack pine (Pinus banksiana Lamb.), a North American boreal conifer with large longitudinal distribution, was investigated to test for the possible existence of a genetically distinct lineage in the Maritimes region in northeastern North America, which could be indicative of a mid-latitude coastal refuge during the last glaciation. ? Methods: One maternally inherited mitochondrial DNA (mtDNA) minisatellite marker and four paternally inherited chloroplast DNA (cpDNA) microsatellite markers were used to assess the range-wide geographical structure of jack pine populations with particular focus on northeastern North America. ? Key results: The populations from the Maritimes region presented a unique mtDNA background characterized by very low diversity and the preponderance of a distinctive mitotype. The distribution of cpDNA diversity was not spatially structured, though three chlorotypes were restricted to the east. ? Conclusions: MtDNA data suggest that populations from the Maritimes region derive from a genetically depauperated north-coastal refugium. Contrastingly, the much higher geographical uniformity observed for cpDNA variation indicates that gene flow by pollen had been much more effective than seed gene flow at homogenizing population structure.     

Adult survival and microsatellite diversity in possums: effects of major histocompatibility complex-linked microsatellite diversity but not multilocus inbreeding estimators

Adult survival is perhaps the fitness parameter most important to population growth in long-lived species. Intrinsic and extrinsic covariates of survival are therefore likely to be important drivers of population dynamics. We used long-term mark-recapture data to identify genetic, individual and environmental covariates of local survival in a natural population of mountain brushtail possums (Trichosurus cunninghami). Rainfall and intra-individual diversity at microsatellite DNA markers were associated with increased local survival of adults and juveniles. We contrasted the performance of several microsatellite heterozygosity measures, including internal relatedness (IR), homozygosity by loci (HL) and the mean multilocus estimate of the squared difference in microsatellite allele sizes within an individual (mean d ²). However, the strongest effect on survival was not associated with multilocus microsatellite diversity (which would indicate a genome-wide inbreeding effect), but a subset of two loci. This included a major histocompatibility complex (MHC)-linked marker and a putatively neutral microsatellite locus. For both loci, diversity measures incorporating allele size information had stronger associations with survival than measures based on heterozygosity, whether or not allele frequency information was included (such as IR). Increased survival was apparent among heterozygotes at the MHC-linked locus, but the benefits of heterozygosity to survival were reduced in heterozygotes with larger differences in allele size. The effect of heterozygosity on fitness-related traits was supported by data on endoparasites in a subset of the individuals studied in this population. There was no apparent density dependence in survival, nor an effect of sex, age or immigrant status. Our findings suggest that in the apparent absence of inbreeding, variation at specific loci can generate strong associations between fitness and diversity at linked markers.     

Spatial pattern of central African rainforests can be predicted from average tree size

When considering all trees irrespective of their species, natural tropical rain forests typically exhibit spatial patterns that range from random to regular. The regularity is often interpreted as a footprint of tree competition. Using 23 permanent sample plots totalling 61 ha in the rain forests of central Africa, we characterized their spatial patterns and modelled those that exhibited regularity by a Strauss point process. This Strauss process is obtained as a Markov point process whose interaction function is an exponential function of a competition index commonly used in forestry. The parameter of this Strauss process characterizes the strength of competition. The 23 plots in central Africa differed in tree density and basal area, and could be discriminated depending on the type of spatial patterns: plots having a large basal area with respect to their density had a non regular pattern, whereas those having a small basal area with respect to their density had a regular pattern. For those plots that exhibited regularity, average tree size could be used to predict the strength of competition. The parameter of the Strauss process was significantly related to the average size by a linear relationship, such that competition decreases as average tree size increases. This relationship extrapolated to a null value of the Strauss parameter when average tree size reaches 32 cm in diameter. This relationship between average tree size and spatial pattern is a testable feature for future studies on the relationship between competition and spatial pattern in natural forests.     

Neogene biochronology of Antarctic diatoms: A comparison between two quantitative approaches,CONOP and UAgraph

A quantitative biochronological study by Cody et al. (2008) integrates comprehensive diatom biostratigraphy, magnetostratigraphy, and tephrostratigraphy from 32 Neogene sections around the Southern Ocean and Antarctic continental margin. A recent method, known as Constrained Optimization (CONOP), which can be viewed as a multidimensional version of graphic correlation, is applied to that very interesting database.The goal of the present paper is to discuss some theoretical aspects of quantitative biochronology and to compare the constrained optimization with the deterministic method called Unitary Associations (UAM), a graph theoretical model. We illustrate the fact that the UAM is an extremely powerful and unique theory allowing an in-depth analysis of the internal conflicting inter-taxon stratigraphic relationships, inherent to any complex biostratigraphical database.     

Potential mechanisms for achieving agricultural benefits from biochar application to temperate soils: a review

Natural organic biomass burning creates black carbon which forms a considerable proportion of the soil’s organic carbon. Due to black carbon’s aromatic structure it is recalcitrant and has the potential for long-term carbon sequestration in soil. Soils within the Amazon-basin contain numerous sites where the ‘dark earth of the Indians’ (Terra preta de Indio, or Amazonian Dark Earths (ADE)) exist and are composed of variable quantities of highly stable organic black carbon waste (‘biochar’). The apparent high agronomic fertility of these sites, relative to tropical soils in general, has attracted interest. Biochars can be produced by ‘baking’ organic matter under low oxygen (‘pyrolysis’). The quantities of key mineral elements within these biochars can be directly related to the levels of these components in the feedstock prior to burning. Their incorporation in soils influences soil structure, texture, porosity, particle size distribution and density. The molecular structure of biochars shows a high degree of chemical and microbial stability. A key physical feature of most biochars is their highly porous structure and large surface area. This structure can provide refugia for beneficial soil micro-organisms such as mycorrhizae and bacteria, and influences the binding of important nutritive cations and anions. This binding can enhance the availability of macro-nutrients such as N and P. Other biochar soil changes include alkalisation of soil pH and increases in electrical conductivity (EC) and cation exchange capacity (CEC). Ammonium leaching has been shown to be reduced, along with N₂O soil emissions. There may also be reductions in soil mechanical impedance. Terra preta soils contain a higher number of ‘operational taxonomic units’ and have highly distinctive microbial communities relative to neighbouring soils. The potential importance of biochar soil incorporation on mycorrhizal fungi has also been noted with biochar providing a physical niche devoid of fungal grazers. Improvements in soil field capacity have been recorded upon biochar additions. Evidence shows that bioavailability and plant uptake of key nutrients increases in response to biochar application, particularly when in the presence of added nutrients. Depending on the quantity of biochar added to soil significant improvements in plant productivity have been achieved, but these reports derive predominantly from studies in the tropics. As yet there is limited critical analysis of possible agricultural impacts of biochar application in temperate regions, nor on the likelihood of utilising such soils as long-term sites for carbon sequestration. This review aims to determine the extent to which inferences of experience mostly from tropical regions could be extrapolated to temperate soils and to suggest areas requiring study.     

Genetic structure among sorghum landraces as revealed by morphological variation and microsatellite markers in three agroclimatic regions of Burkina Faso

Diversity among 124 sorghum landraces from 10 villages surveyed in 3 regions of Burkina Faso covering different agroecological zones was assessed by 28 agromorphological traits and 29 microsatellite markers. 94.4% of the landraces collected belonged to the botanical race guinea (consisting of 96.6% guinea gambicum and 3.4% guinea margaritiferum), 74.2% had white kernels, 13.7% had orange and 12.1% had red kernels. Compared to the “village nested within zone” factor, the “variety nested within village within zone” factor predominately contributed to the diversity pattern for all nine statistically analysed quantitative traits. The multivariate analyses performed on ten morphological traits identified five landrace groups, and of these, the red kernel sorghum types appeared the most homogenous. 2 to 17 alleles were detected per locus with a mean 4.9 alleles per locus and a gene diversity (He) of 0.37. Landraces from the sub-Sahelian zone had the highest gene diversity (He = 0.38). Cluster analysis revealed that the diversity was weakly stratified and could not be explained by any biophysical criteria. One homogenous guinea margaritiferum group was distinguished from other guinea landraces. The red kernel type appeared to be genetically distinct from all other guinea landraces. The kernel colour was the principal structuring factor. This is an example of a homogeneous group of varieties selected for a specific use (for local beer preparation), mainly grown around the households in compound fields, and presenting particular agromorphological and genetic traits. This is the most original feature of sorghum diversity in Burkina Faso and should be the focus of special conservation efforts.