Kinetics of metal ion- and pyridoxal-catalyzed transamination and dephosphonylation of 2-amino-3-phosphonopropionic acid

Transamination and dephosphonylation reactions of the Schiff bases of pyridoxal(PL) with aminomethylphosphonic acid (AMP), 2-aminoethylphosphonic acid (2-AEP), and 2-amino-3-phosphonopropionic acid (APP) were studied in the absence and in the presence of Al(III), Zn(II), and Cu(II) ions. Transamination does not occur at measureable rates for the Schiff bases of AMP- and 2-AEP, and for their metal chelates. In the case of APP Schiff bases extensive transamination followed by dephosphonylation were found to occur as successive reactions. The ketimine reaction intermediate was not formed in sufficient concentration to be detected. The formation of alanine as the final product indicates that ketimine to aldimine conversion follows the dephosphonylation step. Since the molar amount of inorganic phosphate produced is considerably greater than that of pyridoxal present, the reaction may be considered to be the conversion of APP to alanine and phosphate with pyridoxal and metal ions as catalysts. The relative catalytic activities of the metal ions is AI(III) > Cu(II) > Zn(II). A proposed mechanism for β-dephosphonylation is compared with the generally accepted mechanism of pyridoxal and metal ion-catalyzed β-decarboxylation.     

Antimalarial and antitrypanosomal activity of a series of amide and sulfonamide derivatives of a 2,5-diaminobenzophenone

Here, we describe a series of readily obtainable benzophenone derivatives with antimalarial and antitrypanosomal activity. The most active compounds display submicromolar activity against Plasmodium falciparum. Micromolar activity is obtained against Trypanosoma brucei. Main problem of the compounds is low selectivity. However, there are indications that separation of antimalarial and cytotoxic activity might by possible. In addition, some compounds inhibit human ABC transporter with nanomolar activity.     

Locations of ectopic beats coincide with spatial gradients of NADH in a regional model of low-flow reperfusion

We studied the origins of ectopic beats during low-flow reperfusion after acute regional ischemia in excised rat hearts. The left anterior descending coronary artery was cannulated. Perfusate was delivered to the cannula using an high-performance liquid chromatography pump. This provided not only precise control of flow rate but also avoided mechanical artifacts associated with vessel occlusion and deocclusion. Optical mapping of epicardial transmembrane potential served to identify activation wavefronts. Imaging of NADH fluorescence was used to quantify local ischemia. Our experiments suggest that low-flow reperfusion of ischemic myocardium leads to a highly heterogeneous ischemic substrate and that the degree of ischemia between adjacent patches of tissue changes in time. In contrast to transient ectopic activity observed during full-flow reperfusion, persistent ectopic arrhythmias were observed during low-flow reperfusion. The origins of ectopic beats were traceable to areas of high spatial gradients of changes in NADH fluorescence caused by low-flow reperfusion.     

Macrocyclic dinuclear Zn(II) complexes: synthesis, structure and hydrolysis of tris(p-nitrophenyl) phosphate

A series of mono- and dinuclear zinc complexes of 3,6,9,17,20,23-hexaaza-29,30-dihydroxy-13,27-dimethyl-tricyclo[23,3,1^11,15]triaconta-1(28),11,13,15(30),25,26-hexaene (H₂L or BDBPH) have been defined in solution by potentiometry. The crystal structure of [Zn₂C₂₆H₄₀N₆O₂(CH₃OH)₂]·Br₂ has been determined by X-ray. Each zinc ion is coordinated to three nitrogen atoms, a bridged-phenolic oxygen atom, and a methanolic oxygen atom, which define a six-coordinated octahedron. Bond lengths of ZnN are in the range of 2.104(3)-2.120(3) Å and distances between Zn and O (bridged-phenolic oxygen) are 2.052(2), 2.062(2) Å, respectively. The dinuclear complexes: [Zn₂L]²⁺ and [Zn₂L(OH)]⁺ play crucial roles in hydrolytic reaction of tris(4-nitrophenyl)phosphate. A possible mechanism showed that [Zn₂L(OH)]⁺ acts as a nucleophile and [Zn₂L]²⁺ stabilizes the formation of the intermediate: [Zn₂L-BNP].     

Homo and hetero dioxygen complexes of Co(II), Cu(II), Ni(II) and Pb(II) with the ligand 3,7,11,19,23,27-hexaaza-33,34-dihydroxy-15,31-dimethyltricyclotetratriaconta-1(32),13,15,17(34),29(33),30-hexaene

In this paper the oxygenation of HDTHCo homo and heterodinuclear complexes with Cu(II), Ni(II) and Pb(II) in aqueous solution by control of the stoichiometry of metal ions and HDTH as well as p[H] of solution was investigated (HDTH is a dinucleating 28-membered hexaazadiphenol macrocyclic ligand, 3,7,11,19,23,27-hexaaza-33,34-dihydroxy-15,31-dimethyl-tricyclo-tetratriaconta-1(32),13,15,17(34),29(33),30-hexaene). The pH potentiometric method was utilized successfully to determine oxygenation constants and to determine the distribution of species present in the solution as a function of p[H]. Spectrophotometry was used to investigate the oxygenation process of the homo and heterodinuclear complexes. The X-ray crystal structure of homodinuclear complexes of Ni(II) is also reported. These studies suggested autooxidation takes place during the oxygenation of homo and heterodinuclear Co(II) complexes of the macrocyclic ligand. The neighboring effect increases in the order Ni(II)<Cu(II)<Pb(II)<Co(II). Pb(II) stimulates the neighboring Co(II) to accept dioxygen in its sixth vacant position. Ni(II) is not helpful to Co(II) in its oxygenation.     

Protein signatures correspond to survival outcomes of AJCC stage III melanoma patients

Outcomes for melanoma patients with stage III disease differ widely even within the same subcategory. Molecular signatures that more accurately predict prognosis are needed to stratify patients according to risk. Proteomic analyses were used to identify differentially abundant proteins in extracts of surgically excised samples from patients with stage IIIc melanoma lymph node metastases. Analysis of samples from patients with poor (n = 14, <1 yr) and good (n = 19, >4 yr) survival outcomes identified 84 proteins that were differentially abundant between prognostic groups. Subsequent selected reaction monitoring analysis verified 21 proteins as potential biomarkers for survival. Poor prognosis patients are characterized by increased levels of proteins involved in protein metabolism, nucleic acid metabolism, angiogenesis, deregulation of cellular energetics and methylation processes, and decreased levels of proteins involved in apoptosis and immune response. These proteins are able to classify stage IIIc patients into prognostic subgroups (P < 0.02). This is the first report of potential prognostic markers from stage III melanoma using proteomic analyses. Validation of these protein markers in larger patient cohorts should define protein signatures that enable better stratification of stage III melanoma patients.     

A Cell Line (HEW) from Embryos of Haddock (Melanogrammus aeglefinius) and Its Capacity to Tolerate Environmental Extremes

Cell lines can be useful experimental tools for studying marine fish, which are often difficult to routinely obtain and maintain in the laboratory. As few cell lines are available from coldwater marine fish, cultures were initiated from late gastrula embryos of haddock (Melanogrammus aeglefinus) in Leibovitz's L-15 with fetal bovine serum (FBS). From one culture, a cell line (HEW) emerged that has been grown for close to 100 population doublings, was heteroploid, and expressed telomerase activity, all of which suggest HEW is immortal. Growth occurred only if FBS was present and was optimal at 12 to 18°C. Usually most cells had an epithelial-like morphology, but under some conditions, cells drew up into round central bodies from which radiated cytoplasmic extensions with multiple branches. These neural-like cells appeared within a few hours of cultures being placed at 28°C or being switch to a simple salt solution (SSS). At 28°C, cells died within 24 h. In SSS, HEW cells survived as a monolayer for at least 7 days. The sensitivity of HEW cells to morphological change and their capacity to withstand starvation should make them useful for investigating cellular responses to environmental stresses.     

Production of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system

Gaucher's disease, a lysosomal storage disorder caused by mutations in the gene encoding glucocerebrosidase (GCD), is currently treated by enzyme replacement therapy using recombinant GCD (Cerezyme^®) expressed in Chinese hamster ovary (CHO) cells. As complex glycans in mammalian cells do not terminate in mannose residues, which are essential for the biological uptake of GCD via macrophage mannose receptors in human patients with Gaucher's disease, an in vitro glycan modification is required in order to expose the mannose residues on the glycans of Cerezyme^®. In this report, the production of a recombinant human GCD in a carrot cell suspension culture is described. The recombinant plant-derived GCD (prGCD) is targeted to the storage vacuoles, using a plant-specific C-terminal sorting signal. Notably, the recombinant human GCD expressed in the carrot cells naturally contains terminal mannose residues on its complex glycans, apparently as a result of the activity of a special vacuolar enzyme that modifies complex glycans. Hence, the plant-produced recombinant human GCD does not require exposure of mannose residues in vitro , which is a requirement for the production of Cerezyme^®. prGCD also displays a level of biological activity similar to that of Cerezyme^® produced in CHO cells, as well as a highly homologous high-resolution three-dimensional structure, determined by X-ray crystallography. A single-dose toxicity study with prGCD in mice demonstrated the absence of treatment-related adverse reactions or clinical findings, indicating the potential safety of prGCD. prGCD is currently undergoing clinical studies, and may offer a new and alternative therapeutic option for Gaucher's disease.     

Dissecting the Phenotypic Components of Crop Plant Growth and Drought Responses Based on High-Throughput Image Analysis

Significantly improved crop varieties are urgently needed to feed the rapidly growing human population under changing climates. While genome sequence information and excellent genomic tools are in place for major crop species, the systematic quantification of phenotypic traits or components thereof in a high-throughput fashion remains an enormous challenge. In order to help bridge the genotype to phenotype gap, we developed a comprehensive framework for high-throughput phenotype data analysis in plants, which enables the extraction of an extensive list of phenotypic traits from nondestructive plant imaging over time. As a proof of concept, we investigated the phenotypic components of the drought responses of 18 different barley (Hordeum vulgare) cultivars during vegetative growth. We analyzed dynamic properties of trait expression over growth time based on 54 representative phenotypic features. The data are highly valuable to understand plant development and to further quantify growth and crop performance features. We tested various growth models to predict plant biomass accumulation and identified several relevant parameters that support biological interpretation of plant growth and stress tolerance. These image-based traits and model-derived parameters are promising for subsequent genetic mapping to uncover the genetic basis of complex agronomic traits. Taken together, we anticipate that the analytical framework and analysis results presented here will be useful to advance our views of phenotypic trait components underlying plant development and their responses to environmental cues.