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41.
Shouvik Das Hari D. Upadhyaya Deepak Bajaj Alice Kujur Saurabh Badoni Laxmi Vinod Kumar Shailesh Tripathi C. L. Laxmipathi Gowda Shivali Sharma Sube Singh Akhilesh K. Tyagi Swarup K. Parida 《DNA research》2015,22(3):193-203
A rapid high-resolution genome-wide strategy for molecular mapping of major QTL(s)/gene(s) regulating important agronomic traits is vital for in-depth dissection of complex quantitative traits and genetic enhancement in chickpea. The present study for the first time employed a NGS-based whole-genome QTL-seq strategy to identify one major genomic region harbouring a robust 100-seed weight QTL using an intra-specific 221 chickpea mapping population (desi cv. ICC 7184 × desi cv. ICC 15061). The QTL-seq-derived major SW QTL (CaqSW1.1) was further validated by single-nucleotide polymorphism (SNP) and simple sequence repeat (SSR) marker-based traditional QTL mapping (47.6% R2 at higher LOD >19). This reflects the reliability and efficacy of QTL-seq as a strategy for rapid genome-wide scanning and fine mapping of major trait regulatory QTLs in chickpea. The use of QTL-seq and classical QTL mapping in combination narrowed down the 1.37 Mb (comprising 177 genes) major SW QTL (CaqSW1.1) region into a 35 kb genomic interval on desi chickpea chromosome 1 containing six genes. One coding SNP (G/A)-carrying constitutive photomorphogenic9 (COP9) signalosome complex subunit 8 (CSN8) gene of these exhibited seed-specific expression, including pronounced differential up-/down-regulation in low and high seed weight mapping parents and homozygous individuals during seed development. The coding SNP mined in this potential seed weight-governing candidate CSN8 gene was found to be present exclusively in all cultivated species/genotypes, but not in any wild species/genotypes of primary, secondary and tertiary gene pools. This indicates the effect of strong artificial and/or natural selection pressure on target SW locus during chickpea domestication. The proposed QTL-seq-driven integrated genome-wide strategy has potential to delineate major candidate gene(s) harbouring a robust trait regulatory QTL rapidly with optimal use of resources. This will further assist us to extrapolate the molecular mechanism underlying complex quantitative traits at a genome-wide scale leading to fast-paced marker-assisted genetic improvement in diverse crop plants, including chickpea. 相似文献
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Eswari J. Satya Majdoubi Jihen Naik Sweta Gupta Sneha Bit Arindam Rahimi-Gorji Mohammad Saleem Anber 《Biomechanics and modeling in mechanobiology》2020,19(5):1697-1711
Biomechanics and Modeling in Mechanobiology - Blood flow analysis in the artery is a paramount study in the field of arterial stenosis evaluation. Studies conducted so far have reported the... 相似文献
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Tripathi Laxmi Narayan Praveena M. Johns Ben Basu Jaydeep Kumar 《Plasmonics (Norwell, Mass.)》2018,13(5):1811-1816
Plasmonics - Nanoantenna-enhanced ultrafast emission from colloidal quantum dots as quantum emitters is required for fast quantum communications. On-chip integration of such devices requires a... 相似文献
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Syed Bilal Ahmad Andrabi Subhash Kumar Tripathi Obaiah Dirasantha Kartiek Kanduri Sini Rautio Catharina C. Gross Sari Lehtimäki Kanchan Bala Johanna Tuomisto Urvashi Bhatia Deepankar Chakroborty Laura L. Elo Harri Lähdesmäki Heinz Wiendl Omid Rasool Riitta Lahesmaa 《Cell reports》2018,22(8):2094-2106
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In an effort to compare the molecular basis of differential toxic activity of botulinum neurotoxin A (BoNT/A) and BoNT/E, we have analyzed their membrane channel activity by measuring calcein release from liposomes. Both BoNT/A and /E showed a same level of membrane channel activity that was specifically blocked by IgG specific to the neurotoxins. With the use of fluorescein-labeled dextran, we determined that the size of the channel is at least 24.2 A which is appropriate for the translocation of a protein of 50 kDa (the light chain of BoNT). These findings would suggest that the difference in the toxicity level of the two BoNT serotypes might reflect differences in either endopeptidase activity or their binding to receptor(s). 相似文献
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