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Saba Naz Shruti Dabral Sathya Narayanan Nagarajan Divya Arora Lakshya Veer Singh Pradeep Kumar Yogendra Singh Dhiraj Kumar Umesh Varshney Vinay Kumar Nandicoori 《PLoS pathogens》2021,17(3)
Tuberculosis caused by Mycobacterium tuberculosis (Mtb) is a significant public health concern, exacerbated by the emergence of drug-resistant TB. To combat the host’s dynamic environment, Mtb encodes multiple DNA repair enzymes that play a critical role in maintaining genomic integrity. Mtb possesses a GC-rich genome, rendering it highly susceptible to cytosine deaminations, resulting in the occurrence of uracils in the DNA. UDGs encoded by ung and udgB initiate the repair; hence we investigated the biological impact of deleting UDGs in the adaptation of pathogen. We generated gene replacement mutants of uracil DNA glycosylases, individually (RvΔung, RvΔudgB) or together (RvΔdKO). The double KO mutant, RvΔdKO exhibited remarkably higher spontaneous mutation rate, in the presence of antibiotics. Interestingly, RvΔdKO showed higher survival rates in guinea pigs and accumulated large number of SNPs as revealed by whole-genome sequence analysis. Competition assays revealed the superior fitness of RvΔdKO over Rv, both in ex vivo and in vivo conditions. We propose that compromised DNA repair results in the accumulation of mutations, and a subset of these drives adaptation in the host. Importantly, this property allowed us to utilize RvΔdKO for the facile identification of drug targets. 相似文献
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Germination studies were carried out with the wheat varieties NP823, Karchia, Sonora 63, Sonora 64, Mayo 64 and Lerma Rojo in artificially salinized soil maintained at ECe 2, 8, 12 and 16 mmhos/cm at 25°C. Early seedling growth and metabolism of variety NP 823 was studied in salt solutions alone and with addition of the growth regulators GA3 and Cycocel (2-chloroethyl trimethylammonium chloride). Soil salinity both depressed and delayed the germination. Among the varieties tested NP 823 and Karchia were relatively less susceptible to salt injury while Lerma Rojo exhibited a maximum susceptibility. Salt supply also brought about a reduction in the early seedling growth, the release of reducing sugar and the amylase activity. The adverse effect on amylase activity was not mediated through the synthesis of enzyme protein but by an inhibition of the enzyme activity. Exogenous supply of GA3 counteracted the adverse effect of salt on amylase activity and the release of reducing sugar but not on the early seedling growth. 相似文献
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Sujatha Narayanan Kutty Marco Valerio Bernasconi Frantiek ifner Rudolf Meier 《Cladistics : the international journal of the Willi Hennig Society》2007,23(1):64-83
The 60 000 described species of Cyclorrhapha are characterized by an unusual diversity in larval life‐history traits, which range from saprophagy over phytophagy to parasitism and predation. However, the direction of evolutionary change between the different modes remains unclear. Here, we use the Scathophagidae (Diptera) for reconstructing the direction of change in this relatively small family (≈ 250 spp.) whose larval habits mirror the diversity in natural history found in Cyclorrhapha. We subjected a molecular data set for 63 species (22 genera) and DNA sequences from seven genes (12S, 16S, Cytb, COI, 28S, Ef1‐alfa, Pol II) to an extensive sensitivity analysis and compare the performance of three different alignment strategies (manual, Clustal, POY). We find that the default Clustal alignment performs worst as judged by character incongruence, topological congruence and branch support. For this alignment, scoring indels as a fifth character state worsens character incongruence and topological congruence. However, manual alignment and direct optimization perform similarly well and yield near‐identical trees, although branch support is lower for the direct‐optimization trees. All three alignment techniques favor the upweighting of transversion. We furthermore confirm the independence of the concepts “node support” and “node stability” by documenting several cases of poorly supported nodes being very stable and cases of well supported nodes being unstable. We confirm the monophyly of the Scathophagidae, its two constituent subfamilies, and most genera. We demonstrate that phytophagy in the form of leaf mining is the ancestral larval feeding habit for Scathophagidae. From phytophagy, two shifts to saprophagy and one shift to predation has occurred while a second origin of predation is from a saprophagous ancestor. © The Willi Hennig Society 2006. 相似文献
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On the preparation of tropoelastin from embryonic chick aorta 总被引:3,自引:0,他引:3