Particle Flow Analysis

Several authors have highlighted the potential risks of nanoparticles (NPs). Still, little is known about the magnitude of emissions of NPs from society. Here, the method of explorative particle flow analysis (PFA), a modification of the more well‐known substance flow analysis (SFA), is suggested. In explorative PFA, particle number instead of mass is used as flow and stock metric and explorative scenarios are used to account for potential technology diffusion and, consequently, potentially higher emissions. The method has been applied in a case study of the use phase of titanium dioxide (TiO₂) NPs in paint, sunscreen and self‐cleaning cement. The results indicate that the current largest emissions of TiO₂ NPs originate from the use of sunscreen. One scenario implies that, in the future, the largest flows and stocks of TiO₂ NPs could be related to self‐cleaning cement. Gaps in current knowledge are identified and suggestions for future research are given.     

Estimating human toxicity potential of land application of sewage sludge: the effect of modelling choices

Purpose

Many municipalities are facing increasing pressure to adapt solid waste and wastewater management infrastructures in order to better close nutrient cycles. The focus of this study is on the estimation of the human toxicity potential associated with chemical contaminants released upon the application of sewage sludge to agricultural land. More specifically, this study investigated the effect of modelling choices regarding fate and exposure assessment.

Methods

Monitoring data were collected for contaminants present in the sewage sludge from the wastewater treatment plant in Gothenburg and from other municipal wastewater treatment plants in Sweden. Based on these monitoring data, an overall burden of disease was estimated using characterisation factors taken from the USEtox models (versions 1.01 and 2.0). For the exposure through vegetables, an alternative life cycle impact assessment (LCIA) model was developed. The intake fractions thus obtained were used in combination with human health effect factors taken from the USEtox 2.0 database. The model results were compared with the USEtox models, and whether these two versions of the USEtox model provide significantly different results was also examined. The potential relevance of accidental ingestion of sludge was also considered.

Results and discussion

The different LCIA models provided burden of disease estimates that differed from one another for individual contaminants (up to five orders of magnitude). The aggregated burdens of disease (i.e. sum for all contaminants considered in this study) estimated through different model variants, however, were of the same order of magnitude. For both metals and organic contaminants, only a small set of contaminants was found to make significant contributions to the aggregate burden of disease. However, it is uncertain whether the 15 metals and 106 organic contaminants covered by this study are those of greatest health significance of all contaminants potentially present in sewage sludge.

Conclusions and recommendations

The results of this study indicate that the technical information provided by the various approaches to modelling human toxicity in life cycle assessment (LCA) in the context of land application of sewage sludge management is consistent on the whole. However, given the uncertainties associated with the assessment of human toxicity in LCA, it is important to also contemplate the extent to which LCA in general is capable of informing the sewage sludge debate when it comes to human toxicity and possibly also other indicators. Future research could focus on identifying which types of questions of interest in the context of sewage management can be answered by LCA and which cannot.

     

Hemidesmosomal Molecular Changes in Dermatitis Herpetiformis; Decreased Expression of BP230 and Plectin/HD1 in Uninvolved Skin

Recent BP230-knockout experiments with subsequent blistering and recently identified plectin/HD1 mutations in epidermolysis bullosa simplex patients suggest that defective expression of BP230 and plectin/HD1 may predispose to blister formation in human skin. We have studied the expression of the epithelial adhesion complex as well as the basement membrane and anchoring fibril antigens in uninvolved dermatitis herpetiformis skin to find out if alterations can be detected in these structures predisposing to the blister formation typical of the disease. Ten uninvolved dermatitis herpetiformis skin specimens, which all showed clear granular deposits of IgA under the basement membrane in direct immunofluorescence and five normal skin specimens, were studied by indirect immunofluorescence technique. Six uninvolved dermatitis herpetiformis skin specimens showed distinctly decreased immunoreaction for BP230 and four uninvolved dermatitis herpetiformis skin specimens showed distinctly decreased immunoreaction for plectin/HD1. All five skin controls showed strong immunoreactions for BP230 and plectin/HD1. Other hemidesmosomal proteins including BP180 and integrin 64, as well as basement membrane proteins laminin-5, laminin-1, nidogen and type IV collagen, and the anchoring fibril protein type VII collagen showed a normal strong expression. Our results suggest that alterations in BP230 and plectin/HD1 may contribute or predispose to blister formation in dermatitis herpetiformis skin.     

A search for H/ACA snoRNAs in yeast using MFE secondary structure prediction

MOTIVATION: Noncoding RNA genes produce functional RNA molecules rather than coding for proteins. One such family is the H/ACA snoRNAs. Unlike the related C/D snoRNAs these have resisted automated detection to date. RESULTS: We develop an algorithm to screen the yeast genome for novel H/ACA snoRNAs. To achieve this, we introduce some new methods for facilitating the search for noncoding RNAs in genomic sequences which are based on properties of predicted minimum free-energy (MFE) secondary structures. The algorithm has been implemented and can be generalized to enable screening of other eukaryote genomes. We find that use of primary sequence alone is insufficient for identifying novel H/ACA snoRNAs. Only the use of secondary structure filters reduces the number of candidates to a manageable size. From genomic context, we identify three strong H/ACA snoRNA candidates. These together with a further 47 candidates obtained by our analysis are being experimentally screened.     

A Probabilistic Model for Hydrokinetic Turbine Collision Risks: Exploring Impacts on Fish

A variety of hydrokinetic turbines are currently under development for power generation in rivers, tidal straits and ocean currents. Because some of these turbines are large, with rapidly moving rotor blades, the risk of collision with aquatic animals has been brought to attention. The behavior and fate of animals that approach such large hydrokinetic turbines have not yet been monitored at any detail. In this paper, we conduct a synthesis of the current knowledge and understanding of hydrokinetic turbine collision risks. The outcome is a generic fault tree based probabilistic model suitable for estimating population-level ecological risks. New video-based data on fish behavior in strong currents are provided and models describing fish avoidance behaviors are presented. The findings indicate low risk for small-sized fish. However, at large turbines (≥5 m), bigger fish seem to have high probability of collision, mostly because rotor detection and avoidance is difficult in low visibility. Risks can therefore be substantial for vulnerable populations of large-sized fish, which thrive in strong currents. The suggested collision risk model can be applied to different turbine designs and at a variety of locations as basis for case-specific risk assessments. The structure of the model facilitates successive model validation, refinement and application to other organism groups such as marine mammals.     

Endonuclease Specificity and Sequence Dependence of Type IIS Restriction Enzymes

Restriction enzymes that recognize specific sequences but cleave unknown sequence outside the recognition site are extensively utilized tools in molecular biology. Despite this, systematic functional categorization of cleavage performance has largely been lacking. We established a simple and automatable model system to assay cleavage distance variation (termed slippage) and the sequence dependence thereof. We coupled this to massively parallel sequencing in order to provide sensitive and accurate measurement. With this system 14 enzymes were assayed (AcuI, BbvI, BpmI, BpuEI, BseRI, BsgI, Eco57I, Eco57MI, EcoP15I, FauI, FokI, GsuI, MmeI and SmuI). We report significant variation of slippage ranging from 1–54%, variations in sequence context dependence, as well as variation between isoschizomers. We believe this largely overlooked property of enzymes with shifted cleavage would benefit from further large scale classification and engineering efforts seeking to improve performance. The gained insights of in-vitro performance may also aid the in-vivo understanding of these enzymes.     

The time-trend and the relation between smoking and circulating selenium concentrations in Norway

ObjectivesThe objectives of this study were to investigate biomarkers of selenium status in relation to smoking habits and to analyze the time-trend of selenium in serum (S-Se) in Norway during the time period 1995–2006.MethodsThe impact of smoking habits was investigated in a population recruited to a cross-sectional study of blue-collar workers in the southern part of the country (n=98). The time-trend was studied in all subjects who delivered blood samples for the determination of S-Se to a large commercial clinical chemistry laboratory in Norway.ResultsSmokers had 0.14 and 0.20 μmol/L lower concentrations of selenium in whole blood (B-Se) and serum, respectively, than non-smokers. The amount of smoking, as assessed by the serum cotinine concentration, was negatively associated with the B-Se concentration (Pearson's r=?0.43). The 1/3 of the blue-collar workers with the lowest concentrations of B-Se or S-Se had lower activity of glutathione peroxidase in serum (S-GSHpx) than the remaining subjects. Snuff users had about the same levels of B-Se and S-Se as the non-smokers, although they had about the same amount of nicotine metabolites in urine and serum as the smokers. A decreasing trend of S-Se was observed during the observation period from 1995 to 2006. The mean concentration was 1.26 μmol/L in 1995, while the lowest mean concentration was measured in 2003 (1.01 μmol/L).ConclusionSmoking, but not snuffing, is associated with lower concentrations of B-Se and S-Se. The reduction of B-Se is negatively associated with the nicotine biomarker cotinine in serum. A substantial proportion of blue-collar workers had not maximized the activity of S-GSHpx. Selenium status may have become poorer since 1995.     

Immunohistology on Formol-Sublimate Fixed and Paraplast Embedded Kidney Tissue with Comparison to Formalin Fixation and to Pre-Embedding Immunofluorescent Staining

Many alternative methods for immunopathological evaluation of kidney tissue are now available. Immunofluorescent or immunoperoxidase staining of kidney can be performed after formalin fixation and paraffin embedding. This is also possible after fixation with formol-sublimate (Stieve's fluid) using the immunoperoxidase technique or by immunofluorescence after removal of mercury. Reduction of strong nonspecific fluorescence caused by the mercury fixative parallels the elimination of mercury as verified by X-ray microanalysis of the sections. Using a mouse model with injection of graded dilutions of antiglomerular basement membrane antibodies, immunofluorescent staining after Stieve fixation and embedding in Paraplast was about 60% of that in cryostat sections. Immunofluorescent staining after mercury removal can be followed by silver staining for detailed morphologic study of the same 1 μm Paraplast sections. A case of antiglomerular basement membrane glomerulonephritis is illustrated in more detail to show the necessity of alternative methods, including the technique presented, pre-embedding immunofluorescent staining of Epon sections, and electron microscopy, to make a reliable diagnosis of this disease.