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31.
Ingebrigt Sylte Catherine Robin-Jagerschmidt Claire Bihoreau Luce Hendricksen Alain Calvet Claude Bénicourt Svein G. Dahl 《Journal of molecular modeling》1998,4(7):221-233
A three-dimensional model of the neuropeptide Y (NPY) - rat Y1 (rY1) receptor complex and of the NPY 13-36 - rY1 receptor complex was constructed by molecular modeling based on the electron density projection map of rhodopsin and on site-directed mutagenesis studies of neuropeptide receptors. In order to further guide the modeling, the nucleotide sequences encoding Trp287, Cys295 and His297 in the third extracellular loop of the rY1 receptor, were altered by site-directed mutagenesis experiments. Single-point mutated receptors were expressed in COS-7 cells, and tested for their ability to bind radio labelled NPY (3H-NPY). Mutations of Trp287 and His297 completely abolished binding of 3H-NPY. The Cys295Ser mutation only slightly decreased the binding of 3H-NPY, suggesting that the involvement of Cys295 in a disulphide bond is not essential for maintaining the correct three-dimensional structure of the binding site for NPY. Molecular dynamics simulations of NPY-rY1 receptor interactions suggested that Asp199, Asp103 and Asp286 in the receptor interact, respectively, with Lys4, Arg33 and Arg35 of NPY. The simulations also suggested that His297 acts as a hydrogen acceptor from Arg35 in NPY, and that Tyr1 of NPY interacts with a binding pocket on the receptor formed by Asn115, Asp286, Trp287 and His297. Tyr36 in NPY interacted both with Thr41 and Tyr99 via hydrogen bonds, and also with Asn296, His297 and Phe301. The present study suggests that amino acid residues at the extracellular end of the transmembrane helices and in the extracellular loops are strongly involved in binding to NPY and NPY13-36.Electronic Supplementary Material available. 相似文献
32.
Mikkel A. J. Kvasnes Torstein Storaas Hans Chr. Pedersen Svein Bjørk Erlend B. Nilsen 《Ecological Research》2010,25(2):367-374
Different species in a given site or population of a given species in different sites may fluctuate in synchrony if they are
affected similarly by factors such as spatially autocorrelated climate, predation, or by dispersal between populations of
one species. We used county wise time series of hunting bag records of four Norwegian tetraonid species covering 24 years
to examine patterns of interspecific and intraspecific synchrony. We estimated synchrony at three spatial scales; national,
regional (consisting of counties with similar climate), and county level. Ecologically related species with overlapping distributions
exhibited strong synchrony across Norway, but there was much variation between the different regions and counties. Regions
with a long coastline to both the North Sea and the Norwegian Ocean exhibited an overall stronger synchrony than those consisting
of more continental areas. Intraspecific synchrony was generally low across all counties, but stronger synchrony between counties
within regions defined by climatic conditions. Synchrony was negatively related to distance between populations in three of
four species. Only the synchrony in willow ptarmigan showed a clear negative relationship with distance, while the other species
had both strong positive and negative correlations at short distances. Strong interspecific synchrony between some species
pairs within regions and weak intraspecific synchrony across counties within regions suggest a stronger synchronizing effect
from environmental factors such as weather or predation and less effect from dispersal. Our results suggest that the complete
tetraonid community is structured by environmental factors affecting the different species similarly and causes widespread
interspecific synchrony. Local factors affecting the population dynamics nevertheless frequently forces neighbouring populations
out of phase. 相似文献
33.
34.
Novel Rumen Bacterial Diversity in Two Geographically Separated Sub-Species of Reindeer 总被引:2,自引:0,他引:2
Svalbard reindeer (Rangifer tarandus platyrhynchus) live under austere nutritional conditions on the high-arctic archipelago of Svalbard, while semi-domesticated Norwegian
reindeer (R. tarandus tarandus) migrate between lush coastal summer pastures and inland winter pastures with lichens on mainland Norway. Svalbard reindeer
are known to have high rumen concentrations of cellulolytic bacteria, ranging from 15% of the viable population in summer
to 35% in winter, compared to only 2.5% in Norwegian reindeer. Their rumen bacterial diversity was investigated through comparative
analyses of 16S rRNA gene sequences (∼1.5 kb in length) generated from clone libraries (n = 121) and bacterial isolates (n = 51). LIBSHUFF comparisons of the composition of the two 16S rRNA libraries from Norwegian reindeer showed a significant
effect of artificial feeding compared to natural pasture, but failed to yield significant differences between libraries from
Norwegian reindeer and Svalbard reindeer. The combined sequences from reindeer were not significantly different from those
reported in wild Thompson’s gazelle in Kenya but did differ from those reported in domestic cattle in Japan. A total of 90
distinct operational taxonomic units (OTUs) were identified by employing a criterion of 97% similarity, while the Chao1 index
estimated the reindeer bacterial rumen population richness at 698 OTUs. The majority of the clone library sequences (92.5%)
represented novel strains with <97% identity to any known sequence in the public database, most of them affiliated with the
bacterial phylum Firmicutes (low G+C Gram-positives) related to the order Clostridiales (76.7%), while Gram-negative bacteria in the Bacteriodales (Prevotella–Bacteroides group) contributed to 22.5%. Also, six of the isolates were putatively novel strains, possibly representing new species in
the Clostridium subphylum (cluster XIVa), Actinomyces and Butyrivibrio. 相似文献
35.
36.
Tram Thu Vuong Trine M. Reine Amanda Sudworth Trond G. Jenssen Svein O. Kolset 《The journal of histochemistry and cytochemistry》2015,63(4):280-292
Syndecans are important cell surface proteoglycans with many functions; yet, they have not been studied to a very large extent in primary human endothelial cells. The purpose of this study was to investigate syndecan-4 expression in cultured human umbilical vein endothelial cells (HUVECs) and assess its role in inflammatory reactions and experimental wound healing. qRT-PCR analysis revealed that syndecan-3 and syndecan-4 were highly expressed in HUVECs, whereas the expression of syndecan-1 and -2 was low. HUVECs were cultured with the inflammatory mediators lipopolysaccharide (LPS) and interleukin 1β (IL-1β). As a result, syndecan-4 expression showed a rapid and strong increase. Syndecan-1 and -2 expressions decreased, whereas syndecan-3 was unaffected. Knockdown of syndecan-4 using siRNA resulted in changes in cellular morphology and focal adhesion sites, delayed wound healing and tube formation, and increased secretion of the pro-inflammatory and angiogenic chemokine, CXCL8. These data suggest functions for syndecan-4 in inflammatory reactions, wound healing and angiogenesis in primary human endothelial cells. 相似文献
37.
Vikebø FB Ådlandsvik B Albretsen J Sundby S Stenevik EK Huse G Svendsen E Kristiansen T Eriksen E 《PloS one》2011,6(11):e27367
Background
Individual-based biophysical larval models, initialized and parameterized by observations, enable numerical investigations of various factors regulating survival of young fish until they recruit into the adult population. Exponentially decreasing numbers in Northeast Arctic cod and Norwegian Spring Spawning herring early changes emphasizes the importance of early life history, when ichthyoplankton exhibit pelagic free drift. However, while most studies are concerned with past recruitment variability it is also important to establish real-time predictions of ichthyoplankton distributions due to the increasing human activity in fish habitats and the need for distribution predictions that could potentially improve field coverage of ichthyoplankton.Methodology/Principal Findings
A system has been developed for operational simulation of ichthyoplankton distributions. We have coupled a two-day ocean forecasts from the Norwegian Meteorological Institute with an individual-based ichthyoplankton model for Northeast Arctic cod and Norwegian Spring Spawning herring producing daily updated maps of ichthyoplankton distributions. Recent years observed spawning distribution and intensity have been used as input to the model system. The system has been running in an operational mode since 2008. Surveys are expensive and distributions of early stages are therefore only covered once or twice a year. Comparison between model and observations are therefore limited in time. However, the observed and simulated distributions of juvenile fish tend to agree well during early fall. Area-overlap between modeled and observed juveniles September 1st range from 61 to 73%, and 61 to 71% when weighted by concentrations.Conclusions/Significance
The model system may be used to evaluate the design of ongoing surveys, to quantify the overlap with harmful substances in the ocean after accidental spills, as well as management planning of particular risky operations at sea. The modeled distributions are already utilized during research surveys to estimate coverage success of sampled biota and immediately after spills from ships at sea. 相似文献38.
Westereng B Ishida T Vaaje-Kolstad G Wu M Eijsink VG Igarashi K Samejima M Ståhlberg J Horn SJ Sandgren M 《PloS one》2011,6(11):e27807
Many fungi growing on plant biomass produce proteins currently classified as glycoside hydrolase family 61 (GH61), some of which are known to act synergistically with cellulases. In this study we show that PcGH61D, the gene product of an open reading frame in the genome of Phanerochaete chrysosporium, is an enzyme that cleaves cellulose using a metal-dependent oxidative mechanism that leads to generation of aldonic acids. The activity of this enzyme and its beneficial effect on the efficiency of classical cellulases are stimulated by the presence of electron donors. Experiments with reduced cellulose confirmed the oxidative nature of the reaction catalyzed by PcGH61D and indicated that the enzyme may be capable of penetrating into the substrate. Considering the abundance of GH61-encoding genes in fungi and genes encoding their functional bacterial homologues currently classified as carbohydrate binding modules family 33 (CBM33), this enzyme activity is likely to turn out as a major determinant of microbial biomass-degrading efficiency. 相似文献
39.
Enhanced matrix metalloproteinase activity in skeletal muscles of rats with congestive heart failure
Schiøtz Thorud HM Stranda A Birkeland JA Lunde PK Sjaastad I Kolset SO Sejersted OM Iversen PO 《American journal of physiology. Regulatory, integrative and comparative physiology》2005,289(2):R389-R394
Patients with congestive heart failure (CHF) are prone to increased skeletal muscle fatigue. Elevated circulatory concentrations of tumor necrosis factor (TNF)-alpha and monocyte chemoattractant protein-1, which may stimulate matrix metalloproteinase (MMP) activity and, thereby, contribute to skeletal muscle dysfunction, are frequently found in CHF. However, whether skeletal muscle MMP activity is altered in CHF is unknown. Hence, we have used a gelatinase assay to assess the activity of MMP and tissue inhibitors of MMP in single skeletal muscles of rats with CHF 6 wk after induction of myocardial infarction. Sham-operated (Sham) rats were used as controls. We also measured the gene expression and protein contents of MMP-2 and MMP-9 in skeletal muscles of these rats. Plasma MMP activity was nearly seven times higher (P < 0.05) in CHF than in Sham rats. Concomitantly, the MMP activity within single slow- and fast-twitch skeletal muscles of CHF rats increased two- to fourfold compared with Sham animals, whereas tissue inhibitor of MMP activity did not differ (P > 0.05). Preformed MMP-2 and MMP-9 were probably activated in CHF, because neither their gene expression nor protein levels were altered (P > 0.05). Serum concentrations of TNF-alpha and monocyte chemoattractant protein-1 remained unchanged (P > 0.05) between CHF and Sham rats during the 6-wk observation period. We conclude that development of CHF in rats enhances MMP activity, which in turn may distort the normal contractile function of skeletal muscle, thereby contributing to increased skeletal muscle fatigue. 相似文献
40.