Fish attraction to artificial reefs not always harmful: a simulation study

The debate on whether artificial reefs produce new fish or simply attract existing fish biomass continues due to the difficulty in distinguishing these processes, and there remains considerable doubt as to whether artificial reefs are a harmful form of habitat modification. The harm typically associated with attraction is that fish will be easier to harvest due to the existing biomass aggregating at a newly deployed reef. This outcome of fish attraction has not progressed past an anecdotal form, however, and is always perceived as a harmful process. We present a numerical model that simulates the effect that a redistributed fish biomass, due to an artificial reef, has on fishing catch per unit effort (CPUE). This model can be used to identify the scenarios (in terms of reef, fish, and harvest characteristics) that pose the most risk of exploitation due to fish attraction. The properties of this model were compared to the long‐standing predictions by Bohnsack (1989) on the factors that increase the risk or the harm of attraction. Simulations revealed that attraction is not always harmful because it does not always increase maximum fish density. Rather, attraction sometimes disperses existing fish biomass making them harder to catch. Some attraction can be ideal, with CPUE lowest when attraction leads to an equal distribution of biomass between natural and artificial reefs. Simulations also showed that the outcomes from attraction depend on the characteristics of the target fish species, such that transient or pelagic species are often at more risk of harmful attraction than resident species. Our findings generally agree with Bohnsack's predictions, although we recommend distinguishing “mobility” and “fidelity” when identifying species most at risk from attraction, as these traits had great influence on patterns of harvest of attracted fish biomass.     

The influence of upwelling,coastal currents and water temperature on the distribution of the red tide dinoflagellate, <Emphasis Type="Italic">Noctiluca scintillans</Emphasis>, along the east coast of Australia

Quasi-synoptic surveys along the east coast of Australia between 28 and 34°S show that the heterotrophic dinoflagellate, Noctiluca scintillans, occurs along this entire stretch of the coast. Areas of relatively high abundance of Noctiluca were observed downstream of regions predisposed to current-induced upwellings as a consequence of alongshore topographic variations. High-resolution temporal and spatial sampling of upwelling events showed that Noctiluca was abundant (up to 28 cells l^?1) within mature upwelled waters. A high proportion (>80%) of fed Noctiluca cells (cells with prey in their vacuoles) was observed in the mature upwelled waters indicating that the observed increase in abundance of Noctiluca was associated with increased feeding activity. The absolute abundance of Noctiluca in upwelled waters was, however, found to vary from one upwelling location to another and between seasons. In particular, highest abundances of Noctiluca were recorded south of 31.5°S, where the East Australian Current (EAC) characteristically separates from the coast. The high abundances partly arise from southward advection and retention of the Noctiluca cells, and partly from upwelling inshore of the separated EAC driven by cross-shelf boundary layer fluxes. The temperature of the EAC was also found to influence absolute abundances. Surface water temperatures during our summer cruise were anomalously high due to a strong La Niña phase, and up to 4°C warmer than during our spring cruise. We found that the warmer surface water temperatures were associated with relatively lower average abundances of Noctiluca in the near shore zone.     

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases

Background  

Increasingly, metabolite and reaction information is organized in the form of genome-scale metabolic reconstructions that describe the reaction stoichiometry, directionality, and gene to protein to reaction associations. A key bottleneck in the pace of reconstruction of new, high-quality metabolic models is the inability to directly make use of metabolite/reaction information from biological databases or other models due to incompatibilities in content representation (i.e., metabolites with multiple names across databases and models), stoichiometric errors such as elemental or charge imbalances, and incomplete atomistic detail (e.g., use of generic R-group or non-explicit specification of stereo-specificity).     

Regioselective C-3-O-acylation and O-methylation of 4,6-O-benzylidene-beta-D-gluco- and galactopyranosides displaying a range of anomeric substituents.

The regioselective C-3-O-acylation and O-methylation of a range of 4,6-O-benzylidene-beta-D-gluco- and galactopyranosides has been studied. Regioselectivity is achieved by forming the copper chelate of the 2,3-diol using either sodium hydride and copper(II) chloride, or copper(II) acetylacetanoate, or copper(II) acetate, prior to introduction of the acylating or methylating agent.     

Genetic mapping of new DNA probes at Xq27 defines a strategy for DNA studies in the fragile X syndrome

The fragile X syndrome is the most common cause of familial mental retardation and is characterized by a fragile site at the end of the long arm of the X chromosome. The unusual genetics and cytogenetics of this X-linked condition make genetic counseling difficult. DNA studies were of limited value in genetic counseling, because the nearest polymorphic DNA loci had recombination fractions of 12% or more with the fragile X mutation, FRAXA. Five polymorphic loci have recently been described in this region of the X chromosome. The positions of these loci in relation to FRAXA were defined in a genetic linkage study of 112 affected families. The five loci--DXS369, DXS297, DXS296, IDS, and DXS304--had recombination fractions of 4% or less with FRAXA. The closest locus, DXS296, was distal to FRAXA and had a recombination fraction of 2%. The polymorphisms at these loci can be detected in DNA enzymatically digested with a limited number of restriction endonucleases. A strategy for DNA studies which is based on three restriction endonucleases and on five probes will detect one or more of these polymorphisms in 94% of women. This strategy greatly increases the utility of DNA studies in providing genetic advice to families with the fragile X syndrome.     

Zooplankton biomass gradient off south-western Nova Scotia: nearshore ctenophore predation or hydrographic separation?

A persistent large-scale cross-shelf gradient in zooplanktonbiomass >1050 µm was evident off south-western NovaScotia during annual spring surveys between 1985 and 1987, withrelatively low levels inshore and higher levels offshore. Conversely,the abundance of the tentaculate ctenophore Pleurobrachia pileuswas the greatest inshore, and distributed reciprocally to zooplankton>1050 µm. The principle prey of both adult ctenophoresand post-larval cod is zooplankton >1050 µm (primarilycalanoid copepods), and cod growth rates are strongly influencedby prey biomass. Ctenophore predation appears to have been responsiblefor the low nearshore zooplankton biomass, whereas the influenceof hydrographic factors on the zooplankton gradient was minimal.On a smaller scale, persistent, abrupt changes in zooplanktonbiomass >1050 µm and ctenophore density existed 3–30km from shore, in contrast to linear gradients in water density(₁) during a 5 week sampling period in spring 1987. Ctenophoreswere confined to depths <55 m and zooplankton >1050 µmpredominantly occurred at depths >55 m. High concentrationsof chlorophyll and phaeopigment were evident at depths <55m also suggesting intense predation by ctenophores on largeherbivores. The relatively high proportion of smaller zooplankton(153–308 –m) in the nearshore is also consistentwith the predation hypothesis. The reduced growth experiencedby post-larval cod inshore appears generated by ctenophore predationof a common prey resource.