IL10 Variant g.5311A Is Associated with Visceral Leishmaniasis in Indian Population

BackgroundVisceral leishmaniasis (VL) is a multifactorial disease, where the host genetics play a significant role in determining the disease outcome. The immunological role of anti-inflammatory cytokine, Interleukin 10 (IL10), has been well-documented in parasite infections and considered as a key regulatory cytokine for VL. Although VL patients in India display high level of IL10 in blood serum, no genetic study has been conducted to assess the VL susceptibility / resistance. Therefore, the aim of this study is to investigate the role of IL10 variations in Indian VL; and to estimate the distribution of disease associated allele in diverse Indian populations.MethodologyAll the exons and exon-intron boundaries of IL10 were sequenced in 184 VL patients along with 172 ethnically matched controls from VL endemic region of India.

Result and Discussion

Our analysis revealed four variations; rs1518111 (2195 A>G, intron), rs1554286 (2607 C>T, intron), rs3024496 (4976 T>C, 3’ UTR) and rs3024498 (5311 A>G, 3’ UTR). Of these, a variant g.5311A is significantly associated with VL (χ²=18.87; p =0.00001). In silico approaches have shown that a putative micro RNA binding site (miR-4321) is lost in rs3024498 mRNA. Further, analysis of the above four variations in 1138 individuals from 34 ethnic populations, representing different social and linguistic groups who are inhabited in different geographical regions of India, showed variable frequency. Interestingly, we have found, majority of the tribal populations have low frequency of VL (‘A’ of rs3024498); and high frequency of leprosy (‘T’ of rs1554286), and Behcet’s (‘A’ of rs1518111) associated alleles, whereas these were vice versa in castes. Our findings suggest that majority of tribal populations of India carry the protected / less severe allele against VL, while risk / more severe allele for leprosy and Behcet’s disease. This study has potential implications in counseling and management of VL and other infectious diseases.     

The First Extracellular Domain Plays an Important Role in Unitary Channel Conductance of Cx50 Gap Junction Channels

Gap junction (GJ) channels provide direct passage for ions and small molecules to be exchanged between neighbouring cells and are crucial for many physiological processes. GJ channels can be gated by transjunctional voltage (known as V_j-gating) and display a wide range of unitary channel conductance (γ_j), yet the domains responsible for V_j-gating and γ_j are not fully clear. The first extracellular domain (E1) of several connexins has been shown to line part of their GJ channel pore and play important roles in V_j-gating properties and/or ion permeation selectivity. To test roles of the E1 of Cx50 GJ channels, we generated a chimera, Cx50Cx36E1, where the E1 domain of Cx50 was replaced with that of Cx36, a connexin showing quite distinct V_j-gating and γ_j from those of Cx50. Detailed characterizations of the chimera and three point mutants in E1 revealed that, although the E1 domain is important in determining γ_j, the E1 domain of Cx36 is able to effectively function within the context of the Cx50 channel with minor changes in V_j-gating properties, indicating that sequence differences between the E1 domains in Cx36 and Cx50 cannot account for their drastic differences in V_j-gating and γ_j. Our homology models of the chimera and the E1 mutants revealed that electrostatic properties of the pore-lining residues and their contribution to the electric field in the pore are important factors for the rate of ion permeation of Cx50 and possibly other GJ channels.     

Emission analysis of Tb3+‐and Sm3+‐ion‐doped (Li2O/Na2O/K2O) and (Li2O + Na2O/Li2O + K2O/K2O + Na2O)‐modified borosilicate glasses

Four series of borosilicate glasses modified by alkali oxides and doped with Tb³⁺ and Sm³⁺ ions were prepared using the conventional melt quenching technique, with the chemical composition 74.5B₂O₃ + 10SiO₂ + 5MgO + R + 0.5(Tb₂O₃/Sm₂O₃) [where R = 10(Li₂O /Na₂O/K₂O) for series A and C, and R = 5(Li₂O + Na₂O/Li₂O + K₂O/K₂O + Na₂O) for series B and D]. The X‐ray diffraction (XRD) patterns of all the prepared glasses indicate their amorphous nature. The spectroscopic properties of the prepared glasses were studied by optical absorption analysis, photoluminescence excitation (PLE) and photoluminescence (PL) analysis. A green emission corresponding to the ⁵D₄ → ⁷F₅ (543 nm) transition of the Tb³⁺ ions was registered under excitation at 379 nm for series A and B glasses. The emission spectra of the Sm³⁺ ions with the series C and D glasses showed strong reddish‐orange emission at 600 nm (⁴G_5/2 →⁶H_7/2) with an excitation wavelength λ_exci = 404 nm (⁶H_5/2→⁴F_7/2). Furthermore, the change in the luminescence intensity with the addition of an alkali oxide and combinations of these alkali oxides to borosilicate glasses doped with Tb³⁺ and Sm³⁺ ions was studied to optimize the potential alkali‐oxide‐modified borosilicate glass.     

Quantifying nationwide land cover and historical changes in forests of Nepal (1930–2014): implications on forest fragmentation

This study quantifies the nationwide land cover and long-term changes in forests and its implications on forest fragmentation in Nepal. The multi-source datasets were used to generate the forest cover information for 1930, 1975, 1985, 1995, 2005 and 2014. This study analyzes distribution of land cover, rate of deforestation, changes across forest types, forest canopy density and pattern of fragmentation. The land cover legend for 2014 is consisting of 21 classes: tropical dry deciduous sal forest, tropical moist deciduous sal forest, subtropical broad-leaved forest, subtropical pine forest, lower temperate broad leaved forest, upper temperate broad leaved forest, lower temperate mixed broad leaved forest, upper temperate mixed broad leaved forest, temperate needle leaved forest, subalpine forest, plantations, tropical scrub, subtropical scrub, temperate scrub, alpine scrub, grassland, agriculture, water bodies, barren land and settlements. The forest cover statistics for Nepal obtained in this study shows an area of 76,710 km² in 1930 which has decreased to 39,392 km² in 2014. A net loss of 37,318 km² (48.6%) was observed in last eight decades. Analysis of annual rate of net deforestation for the recent period indicates 0.01% during 2005–2014. An increase in the number of forest patches from 6925 (in 1930) to 42,961 (in 2014) was noticed. The significant observation is 75.5% of reduction in core 3 forest, whereas, patch, perforated and edge classes show the increase in percentage of fragmentation classes from 1930 to 2014. The results of this work will support the understanding of deforestation and its consequences on fragmentation for maintaining and improving the forest resources of Nepal.     

Enhancer Activation by Pharmacologic Displacement of LSD1 from GFI1 Induces Differentiation in Acute Myeloid Leukemia

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Differential sensitivity of stomatal and non-stomatal components to NaCl or Na2SO4 salinity in horsegram, Macrotyloma uniflorum (Lam.)

14CO2 assimilation rate (P), leaf diffusive conductance (gs), photosynthetic electron flow, and activities of enzymes of Calvin cycle were studied in a horsegram [Macrotyloma uniflorum (Lam.)] in response to salinity induced by NaCl or Na2SO4. A significant reduction in P and gs by both salt treatments was registered. Na2SO4 caused a greater reduction in gs than the NaCl salinity. Studies with isolated chloroplasts confirmed a greater sensitivity to NaCl than to Na2SO4. Salinity inhibited the photosynthetic electron transport. The activity of ribulose-1,5-bisphosphate carboxylase (E.C.4.1.1.39) was under salinity inhibited more than the activities of other three enzymes of the Calvin cycle, ribulose-5-phosphate kinase (E.C.2.7.1.19), ribose-5-phosphate isomerase (E.C.5.3.16), and NADP-glyceraldehyde-3-phosphate dehydrogenase (E.C.1.2.13). These inhibitions lead to a reduced capacity for ribulose-1,5-bisphosphate regeneration. Isolated chloroplasts extracted from salt stressed plants and supplemented with the substrates of Calvin cycle could elevate P, but the P was always lower than in the controls. Decreased P in horsegram exposed to high salinity can be attributed to both stomatal and non-stomatal components, however, the sensitivity to the salt source, NaCl or Na2SO4, was different.     

Relationships between fish size and otolith size of four bathydemersal fish species from the south eastern Arabian Sea,India

The objective of this study was to estimate a prey body size from the hard parts (e.g. otoliths) of a fish species frequently found in the guts of predators. Length–weight relationships between otolith size (length, height, weight and aspect ratio) and fish size (total length and weight) were determined for four fish species captured in the Arabian Sea by bottom trawl (2015 survey on‐board FORV Sagar Sampada, 200–300 m depth), off the west coast of India: Psenopsis cyanea, Pterygotrigla hemisticta, Bembrops caudimacula and Hoplostethus rubellopterus. No significant differences were noted between the size of the left and right otoliths (t test) in any of the four species. The length–weight relationship of the otolith in all four species showed a negative allometric growth pattern (t test, p < .05). The data fitted well to the regression model for otolith length (OL), otolith height (OH) and otolith weight (OW) to total length (TL) and total weight (TW). Results showed that these relationships are a helpful tool in predicting fish size from the otoliths and in calculating the biomass of these less‐studied fish species during feeding studies and palaentology.