Effects of Enhanced Ultraviolet-B (280–320 nm) Radiation on Growth and Photosynthetic Activities in Aquatic Fern Azolla Microphylla Kaulf

The effects of enhanced UV-B radiation on growth and photosynthetic activities were investigated in fronds of the aquatic fern Azolla microphylla Kaulf. The fronds were exposed to UV-B radiation intermittently once in 3 d during 12 d. Biomass and relative growth rate of UV-B treated Azolla plants and the heterocyst frequency of the UV-B treated symbiont decreased resulting in an increase in doubling time over the control. The doubling time was 3.08 d for control and 3.35 d for UV-B irradiated plants. Chl and carotenoid contents per unit fresh mass and photosystem 2 (PS2) activity also decreased under UV-B treatment. Measurements of photosynthetic activity in terms of fluorescence kinetics and PS2 mediated O₂ evolution showed that the aquatic fern Azolla is sensitive to UV-B damage.     

Development of highly reliable SERS‐active photonic crystal fiber probe and its application in the detection of ovarian cancer biomarker in cyst fluid

Conventionally Surface‐enhanced Raman spectroscopy (SERS) is realized by adsorbing analytes onto nano‐roughened planar substrate coated with noble metals (silver or gold) or their colloidal nanoparticles (NPs). Nanoscale irregularities in such substrates/NPs could lead to SERS sensors with poor reproducibility and repeatability. Herein, we demonstrate a suspended core photonic crystal fiber (PCF) based SERS sensor with extremely high reproducibility and repeatability in measurement with a relative SD of only 1.5% and 4.6%, respectively, which makes it more reliable than any existing SERS sensor platforms. In addition, our platform could improve the detection sensitivity owing to the increased interaction area between the guided light and the analyte, which is incorporated into the holes that runs along the length of the PCF. Numerical calculation established the significance of the interplay between light coupling efficiency and evanescent field distribution, which could eventually determine the sensitivity and reliability of the developed SERS active‐PCF sensor. As a proof of concept, using this sensor, we demonstrated the detection of haptoglobin, a biomarker for ovarian cancer, contained within the ovarian cyst fluid, which facilitated in differentiating the stages of cancer. We envision that with necessary refinements, this platform could potentially be translated as a next‐generation highly sensitive SERS‐active opto‐fluidic biopsy needle for the detection of biomarkers in body fluids.     

Length-weight relationships of six tropical estuarine fish species from Pulicat lagoon,India

Length–weight relationships (LWRs) of six finfish species under two families of the order Perciformes collected from Pulicat lagoon (India) are presented in this study. The fish specimens were collected weekly from the catches of shore seine net (with a mesh size of 50mm at the main webbing and 10 mm at the cod end) operated in the lagoon at an average depth of 2.5 m by the local fishermen during the period from July 2018 to April 2019. This study reports the LWRs for five gobiid and one siganid fish species which have no earlier reports on LWRs. The calculated ‘b’ value ranged from 3.538 (Favonigobius reichei) to 2.677 (Oxyurichthys microlepis) and ‘a’ value varied from 0.0041 (Favonigobius reichei) to 0.0199 (Acentrogobius cyanomos). This study also reports the new maximum total length (TL_max) for the gobiid fish species Oxyurichthys microlepis.     

Effect of Ca2+ on the self assembly of a nonionic peptide aggregate

Summary Conductometry, circular dichroism and fluorescence spectroscopy are the techniques employed to investigate the effect of added calcium ions and other monovalent and divalent metal ions on aqueous solutions of nonionic peptide aggregates, Boc-Leu-Asn-OEt (1). It is observed that among all the metal ions studied, Ca²⁺ ions facilitate the aggregation of the peptide. The interior dielectric constant of the micelles (ε) was found to depend upon the proportion of Ca²⁺ complexed peptide with the peptide mononers in the micelles. When Ca²⁺ ion becomes 1/4th of the peptide concentration, there is a structural transition leading to drastic change in the interior of the micro dielectric constant (ɛ _m).     

Cloning and characterization of the crystal protein-encoding gene of Bacillus thuringiensis subsp. yunnanensis.

Molecular cloning and characterization of a novel cry gene, cry32Aa, of Bacillus thuringiensis subsp. yunnanensis was carried out. The Cry32Aa protein was predicted to have a molecular mass of 139.2 kDa and was found to have an unusual 42-amino-acid-long tail at the C terminus. The cry32Aa gene was localized on the 103-MDa plasmid of the organism. Bioassays showed no toxicity against several moths and mosquitoes. However, it exhibited weak toxicity against larvae of the diamondback moth, Plutella xylostella.     

Microbial N2O consumption in and above marine N2O production hotspots

The ocean is a net source of N₂O, a potent greenhouse gas and ozone-depleting agent. However, the removal of N₂O via microbial N₂O consumption is poorly constrained and rate measurements have been restricted to anoxic waters. Here we expand N₂O consumption measurements from anoxic zones to the sharp oxygen gradient above them, and experimentally determine kinetic parameters in both oxic and anoxic seawater for the first time. We find that the substrate affinity, O₂ tolerance, and community composition of N₂O-consuming microbes in oxic waters differ from those in the underlying anoxic layers. Kinetic parameters determined here are used to model in situ N₂O production and consumption rates. Estimated in situ rates differ from measured rates, confirming the necessity to consider kinetics when predicting N₂O cycling. Microbes from the oxic layer consume N₂O under anoxic conditions at a much faster rate than microbes from anoxic zones. These experimental results are in keeping with model results which indicate that N₂O consumption likely takes place above the oxygen deficient zone (ODZ). Thus, the dynamic layer with steep O₂ and N₂O gradients right above the ODZ is a previously ignored potential gatekeeper of N₂O and should be accounted for in the marine N₂O budget.Subject terms: Water microbiology, Biogeochemistry, Microbial ecology     

Metabolic engineering of chloroplasts for artemisinic acid biosynthesis and impact on plant growth

Chloroplasts offer high-level transgene expression and transgene containment due to maternal inheritance, and are ideal hosts for biopharmaceutical biosynthesis via multigene engineering. To exploit these advantages, we have expressed 12 enzymes in chloroplasts for the biosynthesis of artemisinic acid (precursor of artemisinin, antimalarial drug) in an alternative plant system. Integration of transgenes into the tobacco chloroplast genome via homologous recombination was confirmed by molecular analysis, and biosynthesis of artemisinic acid in plant leaf tissues was detected with the help of ¹³C NMR and ESI-mass spectrometry. The excess metabolic flux of isopentenyl pyrophosphate generated by an engineered mevalonate pathway was diverted for the biosynthesis of artemisinic acid. However, expression of megatransgenes impacted the growth of the transplastomic plantlets. By combining two exogenous pathways, artemisinic acid was produced in transplastomic plants, which can be improved further using better metabolic engineering strategies for commercially viable yield of desirable isoprenoid products.     

Microbial niche differentiation explains nitrite oxidation in marine oxygen minimum zones

Nitrite is a pivotal component of the marine nitrogen cycle. The fate of nitrite determines the loss or retention of fixed nitrogen, an essential nutrient for all organisms. Loss occurs via anaerobic nitrite reduction to gases during denitrification and anammox, while retention occurs via nitrite oxidation to nitrate. Nitrite oxidation is usually represented in biogeochemical models by one kinetic parameter and one oxygen threshold, below which nitrite oxidation is set to zero. Here we find that the responses of nitrite oxidation to nitrite and oxygen concentrations vary along a redox gradient in a Pacific Ocean oxygen minimum zone, indicating niche differentiation of nitrite-oxidizing assemblages. Notably, we observe the full inhibition of nitrite oxidation by oxygen addition and nitrite oxidation coupled with nitrogen loss in the absence of oxygen consumption in samples collected from anoxic waters. Nitrite-oxidizing bacteria, including novel clades with high relative abundance in anoxic depths, were also detected in the same samples. Mechanisms corresponding to niche differentiation of nitrite-oxidizing bacteria across the redox gradient are considered. Implementing these mechanisms in biogeochemical models has a significant effect on the estimated fixed nitrogen budget.Subject terms: Biogeochemistry, Water microbiology, Microbial ecology