Growth duration and root length density of Solanum sisymbriifolium (Lam.) as determinants of hatching of Globodera pallida (Stone)

Solanum sisymbriifolium is a trap crop for potato cyst nematodes (PCN). In this study, we quantified the effect of different periods of growth of S. sisymbriifolium and root length density on hatching of Globodera pallida, using potato and fallow treatments as references. One‐year‐old and 2‐year‐old G. pallida cysts were used in greenhouse experiments carried out in containers over 2 years. Two methods were used in study hatching. In the first method, 7.5‐cm‐diameter soil cores were removed and backfilled with infested soil. In the second method, cysts were buried in nylon bags. The soil cores infested with cysts used in the first method had very poor root colonisation as compared to surrounding bulk soil. Therefore, the effect of S. sisymbriifolium was strongly underestimated by the soil core method. Hatching of PCN juveniles from cysts, measured with the nylon bag method, increased with the duration of growth of S. sisymbriifolium from 47% after 6 weeks of crop growth up to 75% after 21 weeks of crop growth. Reductions per depth layer were also correlated with root length density and varied between 42.6% at 0.26 cm cm^?3 and 85.3% at 5.8 cm cm^?3. Based on a single exponential decay function, a general method is presented to estimate for any PCN management measure the average reduction in the number of years needed to ensure that the PCN population falls below a given density. Calculated reductions in the number of years ranged from 2.3 years for 59% hatching (equivalent to 90 days of S. sisymbriifolium) to 4.4 years for 75% of hatching (equivalent to 150 days of S. sisymbriifolium). These reductions were independent of initial and final population density. Our results corroborate the hatch‐inducing effect of S. sisymbriifolium, underline the importance of growth duration and root length density as determinants of the reduction in PCN population that can be achieved and draw attention to the pitfall in methodology that can arise in the study of hatch stimulation.     

Temporal dynamics in wheat grain zinc distribution: is sink limitation the key?

Background and Aims

Enhancing the zinc (Zn) concentration in wheat (Triticum aestivum) grain is a breeding objective in order to improve human Zn nutrition. At enhanced plant Zn uptake, grain Zn levels do not increase proportionally and within the grain the endosperm Zn levels remain below grain Zn levels. This study analysed the temporal dynamics of Zn concentrations in grain tissues during grain filling to find major bottlenecks.

Methods

Plants of two cultivars were grown at 1 and 5 mg Zn kg⁻¹ soil. Individual panicles were harvested 7, 14, 24 or 34 d after their flowering or at maturity and seeds were dissected into constituting tissues, which were analysed for Zn and other minerals.

Key Results

The Zn concentration of the crease was found to increase five- to nine-fold between 7 and 34 d after anthesis, while that of the endosperm decreased by 7 and 45 % when grown at 1 or 5 mg Zn kg⁻¹, respectively. The Zn turnover rate (d⁻¹) in the crease tissues was either independent of the Zn application level or higher at the lower Zn application level, and the Zn concentration increased in the crease tissues with time during grain filling while the turnover rate gradually decreased.

Conclusions

There is significant within-seed control over Zn entering the seed endosperm. While the seed crease Zn concentration can be raised to very high levels by increasing external Zn supply, the endosperm Zn concentrations will not increase correspondingly. The limited transfer of Zn beyond the crease requires more research to provide further insight into the rate-determining processes and their location along the pathway from crease to the deeper endosperm     

Identification of species traits enhancing yield in wheat-faba bean intercropping: development and sensitivity analysis of a minimalist mixture model

Plant and Soil - Cereal-legume intercropping can result in yield gains compared to monocrops. We aim to identify the combination of crop traits and management practices that confer a yield...     

Classification and Use of Natural and Anthropogenic Soils by Indigenous Communities of the Upper Amazon Region of Colombia

Outsiders often oversimplify Amazon soil use by assuming that abundantly available natural soils are poorly suited to agriculture and that sporadic anthropogenic soils are agriculturally productive. Local perceptions about the potentials and limitations of soils probably differ, but information on these perceptions is scarce. We therefore examined how four indigenous communities in the Middle Caquetá River region in the Colombian Amazon classify and use natural and anthropogenic soils. The study was framed in ethnopedology: local classifications, preferences, rankings, and soil uses were recorded through interviews and field observations. These communities recognized nine soils varying in suitability for agriculture. They identified anthropogenic soils as most suitable for agriculture, but only one group used them predominantly for their swiddens. As these communities did not perceive soil nutrient status as limiting, they did not base crop-site selection on soil fertility or on the interplay between soil quality and performance of manioc genetic resources.     

Integrated Pearl Millet Management in the Sahel: Effects of Legume Rotation and Fallow Management on Productivity and Striga Hermonthica Infestation

Increasing population density and food needs in the Sahel are major drivers behind the conversion of land under natural vegetation to arable land. Intensification of agriculture is a necessity for farmers to produce enough food. As manure is scarce and fertilizers expensive, this study looks into the potential role of cowpea (Vigna unguiculata L.) and short duration fallow in maintaining soil fertility and productivity and in reducing the major weed problem Striga hermonthica (Del.) Benth. The research was carried out ‘on-farm’ in a traditional millet (Pennisetum glaucum (L.) R.Br.) growing area in the Malian Sahel, near Bankass. The four year experiment combined 0, 2, 5, and 7 years of preceding fallow with (i) 4 years of millet, (ii) 1 year of cowpea + 3 years of millet, and (iii) 1 year of cowpea + 3 years of millet/cowpea inter-cropping. Total millet production (4 years) was 1440 kg ha⁻¹ for all systems with 2, 5 or 7 years of preceding fallow against 1180 kg ha⁻¹ for systems without fallow. Cowpea grain production showed no significant differences between fallow treatments. Over 4 years, all cropping systems produced similar total amounts of millet grain, implying that the millet ‘lost’ during the year with a pure cowpea crop in treatments (ii) and (iii) was compensated within three years, while the cowpea grain production was an additional benefit. Such compensation was however not observed for increasing number of preceding fallow years, showing that there is no additional production benefit in 5–7 years of fallow as compared to 2 years.The soil organic carbon content decreased more slowly in treatments with a cowpea pure crop in 1998 than in the millet pure crop, while overall higher contents were observed after preceding fallow also after four years of cropping. Striga hermonthica infestation decreased linearly with duration of preceding fallow, but also after seven years of fallow and one year of cowpea the hemi-parasitic weed still re-appeared. Overall the intensification through a cowpea pure crop and cowpea intercrop in these millet-based systems improved production and a number of other characteristics of the system, making it more viable.Treatments used in the experiments reported here are indicated by the following abbreviations, for further details see text below.     

Value of a newly sequenced bacterial genome

Next-generation sequencing(NGS) technologies have made high-throughput sequencing available to medium- and small-size laboratories, culminating in a tidal wave of genomic information. The quantity of sequenced bacterial genomes has not only brought excitement to the field of genomics but also heightened expectations that NGS would boost antibacterial discovery and vaccine development. Although many possible drug and vaccine targets have been discovered, the success rate of genome-based analysis has remained below expectations. Furthermore, NGS has had consequences for genome quality, resulting in an exponential increase in draft(partial data) genome deposits in public databases. If no further interests are expressed for a particular bacterial genome, it is more likely that the sequencing of its genome will be limited to a draft stage, and the painstaking tasks of completing the sequencing of its genome and annotation will not be undertaken. It is important to know what is lost when we settle for a draft genome and to determine the "scientific value" of a newly sequenced genome. This review addresses the expected impact of newly sequenced genomes on antibacterial discovery and vaccinology. Also, it discusses the factors that could be leading to the increase in the number of draft deposits and the consequent loss of relevant biological information.