Association of mast cells with lung function in chronic obstructive pulmonary disease

Background

Surfactant protein D (SP-D), an innate immune molecule, plays an important protective role during airway inflammation. Deficiency of this molecule induces emphysematous changes in murine lungs, but its significance in human COPD remains unclear.

Methods

We collected bronchoalveolar lavage fluid from 20 subjects with varying degrees of COPD (8 former smokers and 12 current smokers) and 15 asymptomatic healthy control subjects (5 never smokers, 3 remote former smokers, and 7 current smokers). All subjects underwent a complete medical history and pulmonary function testing. SP-D was measured by Enzyme-Linked ImmunoSorbent Assay. Statistical analysis was performed using nonparametric methods and multivariable linear regression for control of confounding. The effect of corticosteroid treatment on SP-D synthesis was studied in vitro using an established model of isolated type II alveolar epithelial cell culture.

Results

Among former smokers, those with COPD had significantly lower SP-D levels than healthy subjects (median 502 and 1067 ng/mL, respectively, p = 0.01). In a multivariable linear regression model controlling for age, sex, race, and pack-years of tobacco, COPD was independently associated with lower SP-D levels (model coefficient -539, p = 0.04) and inhaled corticosteroid use was independently associated with higher SP-D levels (398, p = 0.046). To support the hypothesis that corticosteroids increase SP-D production we used type II alveolar epithelial cells isolated from adult rat lungs. These cells responded to dexamethasone treatment by a significant increase of SP-D mRNA (p = 0.041) and protein (p = 0.037) production after 4 days of culture.

Conclusion

Among former smokers, COPD is associated with lower levels of SP-D and inhaled corticosteroid use is associated with higher levels of SP-D in the lung. Dexamethasone induced SP-D mRNA and protein expression in isolated epithelial cells in vitro. Given the importance of this molecule as a modulator of innate immunity and inflammation in the lung, low levels may play a role in the pathogenesis and/or progression of COPD. Further, we speculate that inhaled steroids may induce SP-D expression and that this mechanism may contribute to their beneficial effects in COPD. Larger, prospective studies are warranted to further elucidate the role of surfactant protein D in modulating pulmonary inflammation and COPD pathogenesis.     

Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data

Inferring connectivity in neuronal networks remains a key challenge in statistical neuroscience. The “common input” problem presents a major roadblock: it is difficult to reliably distinguish causal connections between pairs of observed neurons versus correlations induced by common input from unobserved neurons. Available techniques allow us to simultaneously record, with sufficient temporal resolution, only a small fraction of the network. Consequently, naive connectivity estimators that neglect these common input effects are highly biased. This work proposes a “shotgun” experimental design, in which we observe multiple sub-networks briefly, in a serial manner. Thus, while the full network cannot be observed simultaneously at any given time, we may be able to observe much larger subsets of the network over the course of the entire experiment, thus ameliorating the common input problem. Using a generalized linear model for a spiking recurrent neural network, we develop a scalable approximate expected loglikelihood-based Bayesian method to perform network inference given this type of data, in which only a small fraction of the network is observed in each time bin. We demonstrate in simulation that the shotgun experimental design can eliminate the biases induced by common input effects. Networks with thousands of neurons, in which only a small fraction of the neurons is observed in each time bin, can be quickly and accurately estimated, achieving orders of magnitude speed up over previous approaches.     

Future Spruce Budworm Outbreak May Create a Carbon Source in Eastern Canadian Forests

Spruce budworm (Choristoneura fumiferana Clem.) is an important and recurrent disturbance throughout spruce (Picea sp.) and balsam fir (Abies balsamea L.) dominated forests of North America. Forest carbon (C) dynamics in these ecosystems are affected during insect outbreaks because millions of square kilometers of forest suffer growth loss and mortality. We tested the hypothesis that a spruce budworm outbreak similar to those in the past could switch a forest from a C sink to a source in the near future. We used a model of ecosystem C to integrate past spruce budworm impact sequences with current forest management data on 106,000 km² of forest in eastern Québec. Spruce budworm-caused mortality decreased stand-level merchantable C stocks by 11–90% and decreased ecosystem C stocks by 2–10% by the end of the simulation. For the first 13 years (2011–2024), adding spruce budworm significantly reduced ecosystem C stock change for the landscape from a sink (4.6 ± 2.7 g C m⁻² y⁻¹ in 2018) to a source (−16.8 ± 3.0 g C m⁻² y⁻¹ in 2018). This result was mostly due to reduced net primary production. The ecosystem stock change was reduced on average by 2 Tg C y⁻¹ for the entire simulated area. This study provides the first estimate that spruce budworm can significantly affect the C sink or source status of a large landscape. These results indicate that reducing spruce budworm impacts on timber may also provide an opportunity to mitigate a C source.     

Model for inactivation and disposal of infectious human immunodeficiency virus and radioactive waste in a BL3 facility.

A method is described for autoclaving low levels of solid infectious, radioactive waste. The method permits steam penetration to inactivate biologic waste, while any volatile radioactive compounds generated during the autoclave process are absorbed. Inactivation of radiolabeled infectious waste has been problematic because the usual sterilization techniques result in unacceptable radiation handling practices. If autoclaved under the usual conditions, there exists a high probability of volatilization or release of radioisotopes from the waste. This results in the radioactive contamination of the autoclave and the laboratory area where steam is released from the autoclave. Our results provide a practical method to inactivate and dispose of infectious radioactive waste. For our research, Bacillus pumilus spore strips and vaccinia virus were used as more heat-resistant surrogates of the human immunodeficiency virus (HIV). These surrogates were used because HIV is difficult to grow under most conditions and is less heat tolerant than the surrogates. In addition, B. pumilus has defined cell death values, whereas such values have not been established for HIV. Both B. pumilus and vaccinia virus are less hazardous to work with. The autoclave method is time efficient and can be performed by laboratory personnel with minimal handling of the waste. Furthermore, waste site handlers are able to visually inspect the solid waste containers and ascertain that inactivation procedures have been implemented.     

Protein conformation from electron spin relaxation data.

Electron spin relaxation data from five ferric proteins are analyzed in terms of the fractal model of protein structures. Details of this model are presented. The results lead to a characterization of protein structures by a single parameter, the fractal dimension, d. This structural parameter is shown to determine the temperature dependence of the Raman electron spin relaxation rate, which varies as T3 + 2d. Computations of d are made using x-ray data for 17 proteins. The results range from d = 1.76 for lysozyme to d = 1.34 for ferredoxin. These values are compared with values of d obtained from the present electron spin relaxation data on five ferric proteins. Typical results are d = 1.34 +/- 0.06 from relaxation data and 1.34 +/- 0.05 from x-ray data for ferredoxin; d = 1.67 +/- 0.03 from relaxation data and 1.66 +/- 0.05 from x-ray data for ferricytochrome c. The data thus support the theoretical model. Applications of this spin resonance technique to the study of changes in protein conformation are discussed.     

Release of alkaline phosphatase from human osteosarcoma cells by phosphatidylinositol phospholipase C: effect of tunicamycin

Alkaline phosphatase (orthophosphoric-monoester phosphohydrolase [alkaline optimum], EC 3.1.3.1) expressed in two human osteosarcoma cell lines (Saos-2 and KTOO5) in culture was the tissue nonspecific type and was released from the plasma membrane by phosphatidylinositol (PI) phospholipase C. Despite a difference of 10-fold between the two cell lines in the amount of alkaline phosphatase expressed, the phospholipase solubilized nearly all of the phosphatase from resuspended cells of the two lines. Alkaline phosphatase released with Nonidet-P40 from Saos-2 cells had a Mr of 445,000 by gradient gel electrophoresis in the absence of detergent; that released by PI-phospholipase C was 200,000. The subunit Mr of both solubilized forms was 86,000. Thus, tetrameric alkaline phosphatase in the membrane is attached by a PI-glycan moiety and is converted to dimers when released by PI-phospholipase C. Tunicamycin treatment of Saos-2 cells in culture affected the release of alkaline phosphatase by a high concentration of PI-phospholipase C, but not by a low concentration; both the rate and extent of release were lower from treated cells. However, the enzyme released from the treated cells was in two forms with different molecular weights; it seems that both glycosylated and nonglycosylated dimers were transported to the cell surface and incorporated into the plasma membrane. Glycosylation does not appear to be necessary for alkaline phosphatase to be anchored in the membrane via PI.     

Child growth and the economic value of children in rural Bolivia

Previous investigations have yielded contradictory conclusions concerning the importance of the economic contribution of children to households in agricultural societies. The present study evaluates the significance of children 's economic input in rural Ancoraimes, Bolivia by using child growth as an indirect indicator of the economic value of children. Children whose households differed in size and age composition were compared on the basis of five anthropometric measurements. Children from households with many young, nonproducing children were found to be significantly smaller for their age than children from households with few nonproducing children. Absolute household size had no major effect on child growth. While young children have a negative effect on the growth of children in the household, the positive effect of children as they grow older appears to make up for this loss. In terms of child growth, children are neither a net liability nor a net asset to agricultural households in Ancoraimes.     

Antioxidant levels in germinating soybean seed axes in relation to free radical and dehydration tolerance

The axis of soybean seeds suffer dehydration injury if they are dried to 10% moisture at 36 hours of imbibition, but tolerate this stress if dried at 6 hours of imbibition. Deesterification of membrane phospholipids has been correlated with the increased permeability and increased lipid phase transition temperatures of membranes from dehydration injured tissues. Deesterification, measured as increased free fatty acid:phospholipid and decreased phospholipid:sterol ratios, occurred primarily when the tissue was in the dry state and did not change significantly (P ≤ 0.05) with increasing imbibition time.

When liposomes were exposed to free radicals in vitro, wide angle x-ray diffraction indicated that the phase transition temperature of liposomes prepared from membrane lipid from 36-hour axes (susceptible) increased from 6 to 31°C. In contrast, those from membrane lipid from 6-hour axes (tolerant) increased from 3 to only 8°C, indicating that the tolerance of free radicals previously observed in these membranes was due to a lipid-soluble component.

Lipid-soluble antioxidants were detected in 6-hour imbided axes in much greater quantities than in the 36-hour imbibed axes. The presence of lipid-soluble antioxidants in the membrane apparently contributes to the free radical tolerance of seed membranes observed during the early stages of germination, and these antioxidants may contribute to the dehydration tolerance of this tissue.

     

The physical growth of high altitude Bolivian Aymara children

This study describes the growth characteristics of Aymara children living in Ancoraimes, Bolivia at altitudes between 3800 and 4000 meters. Anthropometric measurements were made on 510 children between the ages of 6. 0 and 20. 9 years, 360 males and 150 females. The growth pattern of Ancoraimes Aymara children is very similar to that of other high altitude Andean populations. They are greatly delayed in height and weight, exhibit little sexual dimorphism in body size and relative to stature, have larger chest dimensions than U.S. children. Compared to Quechua children living at higher altitudes in Peru, Ancoraimes children tend to be taller and heavier but have significantly smaller chest dimensions. Although the causes of the size differences between these two groups are not entirely clear, they may be due to the different altitudes at which the groups reside.