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91.
Hugues Bersini 《Origins of life and evolution of the biosphere》2010,40(2):121-130
There is a long tradition of software simulations in theoretical biology to complement pure analytical mathematics which are
often limited to reproduce and understand the self-organization phenomena resulting from the non-linear and spatially grounded
interactions of the huge number of diverse biological objects. Since John Von Neumann and Alan Turing pioneering works on
self-replication and morphogenesis, proponents of artificial life have chosen to resolutely neglecting a lot of materialistic
and quantitative information deemed not indispensable and have focused on the rule-based mechanisms making life possible,
supposedly neutral with respect to their underlying material embodiment. Minimal life begins at the intersection of a series
of processes which need to be isolated, differentiated and duplicated as such in computers. Only software developments and
running make possible to understand the way these processes are intimately interconnected in order for life to appear at the
crossroad. In this paper, I will attempt to set out the history of life as the disciples of artificial life understand it,
by placing these different lessons on a temporal and causal axis, showing which one is indispensable to the appearance of
the next and how does it connect to the next. I will discuss the task of artificial life as setting up experimental software
platforms where these different lessons, whether taken in isolation or together, are tested, simulated, and, more systematically,
analyzed. I will sketch some of these existing software platforms: chemical reaction networks, Varela’s autopoietic cellular
automata, Ganti’s chemoton model, whose running delivers interesting take home messages to open-minded biologists. 相似文献
92.
Biogeographical analyses are applied to skipper (Hesperioidea) presence/absence data from the Western Mediterranean mainland
and the three largest islands (Sardinia, Corsica and Sicily) in order to identify potential conservation issues. The analyses
performed on species, both collectively and individually, indicate that regional species richness and occurrence in the Mediterranean
zone are largely predicted by latitude and area but that islands have impoverished faunas. Several species, predicted to be
present on these islands from logistic regression of their continental distributions, are actually absent. The number of species
predicted to be present from logistic regression analyses for each island, closely matched the number of species predicted
to occur in regional-focused multiple regression analysis. This suggests that missing species have been identified. When compared
with species that occur in Sicily and Corsica, the missing species are shown to differ for ecological traits, mainly those
linked to altitudinal tolerance. No ecological distinctions were disclosed for Sardinian skippers suggesting a mainly stochastic
colonisation. These results, and those from an analogous study carried out on Papilionoidea, point to Hesperioidea having
(i) overall more impoverished faunas on islands and (ii) being subject to stochastic or historical colonisation events more
than Papilionoidea. Species not predicted to occur on islands based on their mainland distributions and ecological traits,
are foci for conservation attention. However, as many species becoming extinct on the islands may be irreplaceable, all species,
in particular the Sardinian ones, deserve to be conserved. 相似文献
93.
94.
S. P. Kharitonov D. E. Nowak A. I. Nowak N. A. Egorova S. A. Korkina D. V. Osipov O. V. Natal’skaya 《Biology Bulletin》2009,36(5):469-478
Red-breasted goose colonies have been studied near Medusa Bay (73°21′N, 80°32′E), on the northwestern Taimyr Peninsula, and
along the Agapa River (70°11′N, 86°15′E) down to its mouth (71°26′N, 89° 13′E), in the central Taimyr Peninsula. Red-breasted
geese nesting near peregrine falcons are protected by the falcons from arctic foxes; however, they are sometimes attacked
by the falcons themselves. In the colonies near peregrine falcon nests, the vast majority of goose nests were situated no
farther than 100 m from the falcon nest. When food is abundant, falcons protect a larger area around their nest. The distance
between the falcon nest and the surrounding goose nests is inversely related to the falcon’s activity. In years of higher
falcon activity, falcons prevent red-breasted geese from nesting as close to their nest as in years of lower falcon activity.
Additional stimuli are required for red-breasted geese to form colonies near rough-legged buzzard nests. The distance between
snowy owl nests and red-breasted goose nests was smaller when arctic foxes were abundant than when they were scarce. 相似文献
95.
Seasonal dynamics and demographic structure was studied in 15 dominant ground beetle species in the mountain taiga and mountain forest-steppe belts of the Eastern Sayan (Okinskoe Plateau). Life cycles of the dominant ground beetle species were classified by developmental time, seasonal dynamics, and intrapopulation groups with different reproduction timing. The strategies of carabid life cycles adapted to severe mountain conditions of the Eastern Sayan were revealed. 相似文献
96.
Hiroyuki Kozu Isao Kobayashi Mitsutoshi Nakajima Kunihiko Uemura Seigo Sato Sosaku Ichikawa 《Food biophysics》2010,5(4):330-336
This paper uses computational fluid dynamics to simulate and analyze intragastric fluid motions induced by human peristalsis.
We created a two-dimensional computational domain of the distal stomach where peristalsis occurs. The motion of the gastric
walls induced by an antral contraction wave (ACW) on the wall of the computational domain was well simulated using a function
defined in this study. Retropulsive flow caused by ACW was observed near the occluded region, reaching its highest velocity
of approximately 12 mm/s in the narrowest region. The viscosity of the model gastric contents applied in this study hardly
affected the highest velocity, but greatly affected the velocity profile in the computational domain. The shear rate due to
gastric fluid motion was calculated using the numerical output data. The shear rate reached relatively high values of approximately
20 s−1 in the most occluded region. The shear rate profile was almost independent of the fluid viscosity. We also simulated mass
transfer of a gastric digestive enzyme (pepsin) in model gastric content when peristalsis occurs on the gastric walls. The
visualized simulation results suggest that gastric peristalsis is capable of efficiently mixing pepsin secreted from the gastric
walls with an intragastric fluid. 相似文献
97.
O. B. Kazakova E. F. Khusnutdinova G. A. Tolstikov K. Yu. Suponitsky 《Russian Journal of Bioorganic Chemistry》2010,36(4):512-515
New olean-18(19)-ene triterpenoids were effectively synthesized by the interaction of allobetulin or its acetate with phosphorous
oxychloride in refluxing pyridine. The structures of the synthesized 17-chloromethyloleane-18(19)-enes were confirmed by NMR
spectroscopy and X-ray analysis. 相似文献
98.
99.
A. B. Martynenko 《Biology Bulletin》2009,36(2):184-192
Species groups formed in light coniferous forests prevailing in southeastern Russia are considered using the example of butterflies. Problems concerning the formation of species composition and its originality in some insects groups are discussed. A classification analysis of species checklists for twelve local faunas of Transbaikalia and the southern Far East of Russia is performed. It is shown that the faunas of areas occupied by light coniferous forests have a common background. 相似文献
100.
The presence of litter has the potential to alter the population dynamics of plants. In this paper, we explore the effects
of litter on population dynamics using a simple experimental laboratory system with populations of the annual crucifer, Cardamine pensylvanica. Using a factorial experiment with four densities and three litter levels, we determined the effect of litter on biomass
and plant fecundity, and the life stages responsible for these changes in yield. Although litter had significant effects on
seed germination and on seedling survivorship, we show, using a population dynamics model, that these effects were not demographically
significant. Rather, the potential effect of litter on population dynamics resulted almost entirely from its effect on biomass.
Persistent litter suppressed plant biomass and apparently removed the direct density effect present in the absence of litter.
Thus, litter changed the shape of the recruitment curve from slightly humped to asymptotic. In addition to changing the shape
of the recruitment curve, litter reduced the carrying capacity of the populations. Thus, the population dynamics model indicated
that not all statistically significant responses were dynamically significant. Given the potential complexity of litter effects,
simple population models provide a powerful tool for understanding the potential consequences of short-term responses.
Received: 8 September 1999 / Accepted: 5 April 2000 相似文献