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21.
Eva?FreyhultEmail author Peteris?Prusis Maris?Lapinsh Jarl?ES?Wikberg Vincent?Moulton Mats?G?GustafssonEmail author 《BMC bioinformatics》2005,6(1):50
Background
Proteochemometrics is a new methodology that allows prediction of protein function directly from real interaction measurement data without the need of 3D structure information. Several reported proteochemometric models of ligand-receptor interactions have already yielded significant insights into various forms of bio-molecular interactions. The proteochemometric models are multivariate regression models that predict binding affinity for a particular combination of features of the ligand and protein. Although proteochemometric models have already offered interesting results in various studies, no detailed statistical evaluation of their average predictive power has been performed. In particular, variable subset selection performed to date has always relied on using all available examples, a situation also encountered in microarray gene expression data analysis. 相似文献22.
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XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services 总被引:1,自引:0,他引:1
Background
Life sciences make heavily use of the web for both data provision and analysis. However, the increasing amount of available data and the diversity of analysis tools call for machine accessible interfaces in order to be effective. HTTP-based Web service technologies, like the Simple Object Access Protocol (SOAP) and REpresentational State Transfer (REST) services, are today the most common technologies for this in bioinformatics. However, these methods have severe drawbacks, including lack of discoverability, and the inability for services to send status notifications. Several complementary workarounds have been proposed, but the results are ad-hoc solutions of varying quality that can be difficult to use. 相似文献25.
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Summer distribution of Red-legged Partridges Alectoris rufa in relation to water availability on Mediterranean farmland 总被引:1,自引:0,他引:1
The suggestion that the summer distribution of Red-legged Partridges Alectoris rufa in the Mediterranean region is determined by the availability of surface water was examined on the agricultural farm, Alto Alentejo, southern Portugal. Partridge coveys were surveyed between 15 July and 15 August in 1993 and 1994. Using a vector-based Geographic Information System, we assessed, for each covey location and for the locations of a double number of random points, the distance to the nearest water point, distance to field boundaries, distance to water lines and land use classes. Univariate comparisons were made between the two groups of locations, and three multivariate logistic models were fitted through forward stepwise selection to the 1993, 1994 and pooled data sets to estimate the probability of sighting partridge coveys in the study area. Distance to water was significantly lower for partridge locations than for random points in both years and was the only variable selected for all logistic models. Apart from water availability, Red-legged Partridge locations were also affected by land use and distance to field boundaries. 相似文献
28.
Zea ribosomal repeat evolution and substitution patterns 总被引:2,自引:1,他引:1
Zea and Tripsacum nuclear ribosomal internal transcribed spacer (ITS)
sequences were used to evaluate patterns of concerted evolution, rates of
substitutions, patterns of methylation-induced deamination, and structural
constraints of the ITS. ITS pseudogenes were identified by their
phylogenetic position, differences in nucleotide composition, extensive
deamination at ancestral methylation sites, and substitutions resulting in
low-stability secondary RNA structures. Selection was important in shaping
the kinds of polymorphisms and substitutions observed in the ITS. ITS
substitution rates were significantly different among the Zea taxa.
Deamination of cytosines at methylation sites was a potent mutation source,
but selection appeared to maintain high methylation site density throughout
the ribosomal repeat except for the gene promoter. Nucleotide divergence
statistics identified selectively constrained regions at the 5' ends of the
ITS1 and ITS2.
相似文献
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E. S. Starodubova Yu. V. Kuzmenko E. O. Pankova A. A. Latanova O. V. Preobrazhenskaya V. L. Karpov 《Molecular Biology》2018,52(3):453-457
The possibility of enhancing the immunogenicity of the rabies virus glycoprotein antigen encoded by a DNA vaccine has been investigated. Ubiquitin-like protein FAT10 has been attached to the N-terminus of the glycoprotein to target it to the proteasome and stimulate its presentation by MHC class I. Two forms of the protein, chimeric and original, have been detected in cells transfected with the DNA construct encoding the chimeric protein. The presence of the glycoprotein on the cell surface has been detected by immunostaining of transfected cells. The production of IgG and IgG2a antibodies has been more efficiently induced in mice immunized with the plasmid that encodes the chimeric protein than in those immunized with the plasmid that encodes unmodified glycoprotein. Moreover, the level of IgG2a antibodies exceeded the level of IgG1 antibodies, which indicates a preferential increase in the Th1 component of the immune response. The proposed DNA construct that encodes a modified glycoprotein with a proteasome degradation signal may be a promising DNA vaccine immunogen for post-exposure prophylaxis of rabies. 相似文献