Comparing PAR transmission models for forest understorey vegetation

Question: Do Beer's Law models, multi‐layer scattering models, and a semi‐empirical model for predicting PAR transmission through understorey vegetation give comparable results? Do different driving variables (LAI, PLAI and percentage cover) give different results? How do the models vary when fit with species‐specific, species‐average and the ‘default’ parameters recommended in the literature? Location: Upland boreal forests of western North America. Methods: In calibration and validation plots, PAR transmission was measured, total cover visually estimated, and leaf dispersion, PLAI and cover estimated for each species using a point‐frame. Leaf inclination was measured by clinometer. PAR transmission was modelled using empirically‐fit Beer's Law models, a semi‐empirical model based on hemispherical gap fraction and first‐order scattering, and a multi‐layer model allowing multiple scattering. All models were modified to use leaf area index (LAI), vertically projected leaf area index (PLAI), or percentage cover data. Results: The empirical Beer's Law models had the least bias and best precision in predicting PAR transmission. The semi‐empirical model also had little bias and good precision, since the scattering coefficient compensated for problems in the estimation of gap fraction. The multi‐layer model consistently underestimated transmission. There was little benefit in accounting for species separately. LAI and PLAI‐based models were the most precise, but percentage cover models also provided reasonable predictions of PAR transmission. Conclusions: PAR transmission through forest understories can be simply modelled with Beer's Law using one empirical coefficient representing the average understorey species. More complex scattering models are less effective, likely because they fail to account for the complexity of the dispersion of this vegetation layer and its effect on radiation scattering.     

Inflammatory mediators and cartilage biomarkers in synovial fluid after a single inflammatory insult: a longitudinal experimental study

Introduction  

Inflammation is an important feature of many joint diseases, and levels of cartilage biomarkers measured in synovial fluid may be influenced by local inflammatory status. Little is known about the magnitude and time course of inflammation-induced changes in cartilage tissue turnover as measured in vivo by synovial fluid markers. We aimed to study temporal changes in concentrations of inflammatory mediators, matrix metalloproteinase activity and cartilage biomarkers over 1 week in joints with experimentally induced inflammation.     

Modelling Growth-Competition Relationships in Trembling Aspen and White Spruce Mixed Boreal Forests of Western Canada

We examined the effect of competition on stem growth of Picea glauca and Populus tremuloides in boreal mixedwood stands during the stem exclusion stage. We combined traditional approaches of collecting competition data with dendrochronology to provide retrospective measurements of stem diameter growth. Several competition indices including stand basal area (BA), the sum of stem diameter at breast height (SDBH), and density (N) for the broadleaf and coniferous species, as well as similar indices considering only trees with diameters greater than each subject (BAGR, SDBHGR, and NGR), were evaluated. We used a nonlinear mixed model to characterize the basal area increment over the past 5, 10, 15, 20, 25, 30, and 35 years as a function of growth of nearby dominant trees, the size of the subject trees, deciduous and coniferous competition indices, and ecoregions. SDBHGR and BAGR were better predictors for spruce, and SDBHGR and NGR were better for aspen, respectively, than other indices. Results showed strongest correlations with long-term stem growth, as the best models integrated growth for 10–25 years for aspen and ≥25 for spruce. Our model demonstrated a remarkable capability (adjusted R²>0.67) to represent this complex variation in growth as a function of site, size and competition.     

Genetic variation in TIMP1 but not MMPs predict excess FEV1 decline in two general population-based cohorts

Background

An imbalance in Matrix MetalloProteases (MMPs) and Tissue Inhibitors of MMPs (TIMPs) contributes to Chronic Obstructive Pulmonary Disease (COPD) development. Longitudinal studies investigating Single Nucleotide Polymorphisms (SNPs) in MMPs and TIMPs with respect to COPD development and lung function decline in the general population are lacking.

Methods

We genotyped SNPs in MMP1 (G-1607GG), MMP2 (-1306 C/T), MMP9 (3 tagging SNPs), MMP12 (A-82G and Asn357Ser) and TIMP1 (Phe124Phe and Ile158Ile) in 1390 Caucasians with multiple FEV₁ measurements from a prospective cohort study in the general population. FEV₁ decline was analyzed using linear mixed effect models adjusted for confounders. Analyses of the X-chromosomal TIMP1 gene were stratified according to sex. All significant associations were repeated in an independent general population cohort (n = 1152).

Results

MMP2 -1306 TT genotype carriers had excess FEV₁ decline (-4.0 ml/yr, p = 0.03) compared to wild type carriers. TIMP1 Ile158Ile predicted significant excess FEV₁ decline in both males and females. TIMP1 Phe124Phe predicted significant excess FEV₁ decline in males only, which was replicated (p = 0.10) in the second cohort. The MMP2 and TIMP1 Ile158Ile associations were not replicated. Although power was limited, we did not find associations with COPD development.

Conclusions

We for the first time show that TIMP1 Phe124Phe contributes to excess FEV₁ decline in two independent prospective cohorts, albeit not quite reaching conventional statistical significance in the replication cohort. SNPs in MMPs evidently do not contribute to FEV₁ decline in the general population.     

Measuring the effect of an abiotic stress on competition

Using recently developed solution culture techniques, the effect of a non-resource abiotic stress, nickel toxicity, was tested on intraspecific nutrient competition among wheat. The choice of an appropriate statistical model was of paramount importance in interpreting these effects. We argue that a multiplicative model is more appropriate for experiments on interactions of competition and abiotic stress. By such an analysis, nickel had no relative effect on the ability of competition to reduce plant size in two experiments, and caused a small reduction in competition in another. These results are contrary to other reports of the effect of a non-resource abiotic stress on competition and appear to be due to an increased demand for nutrients in the presence of toxic levels of nickel. The effects of an abiotic stress on competition may thus be specitic to the stress and not generalized across all abiotic stresses.     

Pleuston communities are buffered from regional flood pulses: the example of ostracods in the Paraná River floodplain, Brazil

1. It is widely acknowledged that sudden, large‐scale flood pulses are drivers of benthic and planktonic biodiversity change in floodplains. The impact of such pulses on pleuston (biotic communities associated with root systems of floating plants) remains to be demonstrated. Here, we investigate the effects of local and regional drivers on seasonal changes in abundance and diversity of ostracod communities in pleuston. 2. Temporal and spatial distribution patterns of species richness, abundance, diversity and evenness of ostracods associated with the floating water hyacinth, Eichhornia crassipes, in a lentic environment from the upper Paraná River floodplain, were investigated in relation to local, as well as regional, environmental factors. Ostracods were sampled monthly over an annual cycle (March 2004–February 2005). Twenty‐seven species were found, representing the families Cyprididae, Candonidae, Limnocytheridae and Darwinulidae. Both diversity and abundance of ostracod communities showed seasonal changes, although species turn‐over during the year was limited. 3. We tested two hypotheses concerning the causality of these fluctuations: seasonal recruitment and influx of allochthonous ostracods during the flood pulse. Our results indicate that seasonal recruitment is more likely to be the driver of fluctuations in relation to the flood pulse. We postulate that pleuston communities are buffered against possible detrimental effects of flood pulses.     

Reproductive patterns of selected understorey trees in the Malaysian rain forest: the apomictic species

HA, C. O., SANDS, V. E., SOEPADMO, E. & JONG, K., 1988. Reproductive patterns of selected understorey trees in the Malaysian raia forest: the apomictic species. Garcinia is the predominant representative of the Clusiaceae in the understorey of the lowland rain forest of Peninsular Malaysia. In Pasoh Forest Reserve the dioecious species G. paruifolia was investigated since no male trees, but only trees with structurally hermaphodite flowers which later set fruit, were found there. Pollination and embryological studies indicated a condition of non-pseudogamous agamospermy, with no viable pollen grains being formed in the staminodes, and the unfertilized egg cell giving rise to the embryo. Supportive studies were made of microspore development in G. forbesi , and of embryogenesis and seed development in G. malaccensis and G. scortechinii which also appear to be agamospermous. The role of either facultative or obligate apomixis in gene fixation in these dioecious species is discussed, and the possible adaptive significance of reproductive versatility among certain rain forest trees is examined.     

The equilibrium between the mitochondrial ATPase (F1) and its natural inhibitor in submitochondrial particles

1. The reversible equilibrium between the mitochondrial ATPase (F₁) and its naturally occurring inhibitor in Mg-ATP submitochondrial particles has been studied under different conditions.2. High ionic strength favours dissociation of the ATPase inhibitor as tested by ATPase and ATP-driven transhydrogenase activities.3. Dissociation of the ATPase inhibitor results in an increased maximal velocity of the ATPase activity measured in the presence of uncoupler and an increased affinity for adenine nucleotides, in particular for ATP.4. Association of the ATPase inhibitor with inhibitor-depleted Mg-ATP particles causes a slowing of the initial rate of succinate oxidation.5. The antibiotic aurovertin stimulates the ATPase activity of Mg-ATP particles preinculbated in the presence of a supply of oxidative energy. Bound aurovertin impedes the association of inhibitor-deficient particles with ATPase inhibitor.6. The fluorescence of aurovertin bound to inhibitor-containing particles is much less than that of aurovertin bound to inhibitor-depleted particles.7. The oligomycin-sensitivity-conferring protein, added either alone or in the presence or absence of membranous components of the ATPase complex, has little or no effect on the fluorescence of the F₁-aurovertin complex.8. It is suggested that the ATPase inhibitor brings F₁ in a conformation denoted 1F₁ that binds aurovertin with a low quantum yield, a decreased affinity and an increased binding capacity.     

Regeneration of Asparagus officinalis L. through Callus Cultures Derived from Protoplasts

Undifferentiated callus derived from asparagus protoplast cultureshas been used for studies on organogenesis. Root and shoot formationhas been obtained with different hormonal balances. Adeninehas been found to be effective, together with a cytokinin, inpromoting the formation of somatic embryoids in this tissue.