A conserved 3′ extension in unusual group II introns is important for efficient second-step splicing

The B.c.I4 group II intron from Bacillus cereus ATCC 10987 harbors an unusual 3′ extension. Here, we report the discovery of four additional group II introns with a similar 3′ extension in Bacillus thuringiensis kurstaki 4D1 that splice at analogous positions 53/56 nt downstream of domain VI in vivo. Phylogenetic analyses revealed that the introns are only 47–61% identical to each other. Strikingly, they do not form a single evolutionary lineage even though they belong to the same Bacterial B class. The extension of these introns is predicted to form a conserved two-stem–loop structure. Mutational analysis in vitro showed that the smaller stem S1 is not critical for self-splicing, whereas the larger stem S2 is important for efficient exon ligation and lariat release in presence of the extension. This study clearly demonstrates that previously reported B.c.I4 is not a single example of a specialized intron, but forms a new functional class with an unusual mode that ensures proper positioning of the 3′ splice site.     

Socializing makes thick-skinned individuals: on the density of epidermal alarm substance cells in cyprinid fish, the crucian carp (Carassius carassius)

In cyprinid fish, density of epidermal club cells (i.e. alarm substance cells) has been found to vary between lakes with different predator fauna. Because predators can be labelled with chemical cues from prey, we questioned if club cell density could be controlled indirectly by predators releasing prey cues. In particular, we suspected a possible feedback mechanism between chemical alarm signals and their cellular source. We raised crucian carp singly and in groups of four. For both rearing types, fish were exposed to skin extracts of either conspecifics or brown trout (without club cells), and provided either low or high food rations. Independent of rearing type, condition factor and club cell density increased with food ration size, but no change was found in club cell density following exposure to conspecific alarm signals. However, the density of club cells was found significantly higher for fish raised in groups than for fish raised alone. We conclude that an increased condition factor results in more club cells, but crucian carp may also possess an awareness of conspecific presence, given by higher club cell densities when raised in groups. This increase in club cell density may be induced by unknown chemical factors released by conspecifics.     

Circumpolar analysis of morphological and genetic diversity in the Notostracan Lepidurus arcticus

This study presents a first circumpolar screening of the taxonomic and genetic diversity of the crustacean Lepidurus arcticus, belonging to the ‘living fossil’ order Notostraca. Sequencing of a 484 bp segment of the mitochondrial 12S rDNA from 48 populations revealed two distinct haplogroups, each consisting of separate haplotypes. Alignment with published sequences of other species of Lepidurus clearly revealed that all of the studied populations were distinctly different from other species. Some major geographical patterns for distribution of haplogroups and haplotypes were identified, perhaps the most remarkable being the difference in distribution of haplogroups between the neighbouring Svalbard and Bear Island where a larger number of populations were studied. On the Norwegian mainland both haplogroups co-occurred in the same areas, however, and strong conclusions of the distributional pattern are yet premature. The distribution of similar haplotypes over wide geographical ranges suggests high dispersal abilities by Lepidurus. Morphological taxonomic criteria assign all surveyed populations to L. arcticusin spite of a pronounced morphological plasticity. Analysis of major morphological features such as length:width ratio of cephalothorax, the cephalothorax:abdominal length ratio, size of supra-anal plate and eye morphology revealed some distinctive population specific properties. The two major haplogroups differed significantly with regard to the relative size of the supra-anal plate, which also is a standard taxonomic criterion. This first genetic screening of a limited number of populations suggests that a subtler genetic diversity will be revealed when including more populations over a larger geographic area as well as a finer geographical resolution.