Increasing stability reduces conformational heterogeneity in a protein folding intermediate ensemble

A multi-site, time-resolved fluorescence resonance energy transfer methodology has been used to study structural heterogeneity in a late folding intermediate ensemble, IL, of the small protein barstar. Four different intra-molecular distances have been measured within the structural components of IL. The IL ensemble is shown to consist of different sub-populations of molecules, in each of which one or more of the four distances are native-like and the remaining distances are unfolded-like. In very stable conditions that favor formation of IL, all four distances are native-like in most molecules. In less stable conditions, one or more distances are unfolded-like. As stability is decreased, the proportion of molecules with unfolded-like distances increases. Thus, the results show that protein folding intermediates are ensembles of different structural forms, and they demonstrate that conformational entropy increases as structures become less stable. These observations provide direct experimental evidence in support of a basic tenet of energy landscape theory for protein folding, that available conformational space, as represented by structural heterogeneity in IL, becomes restricted as the stability is increased. The results also vindicate an important prediction of energy landscape theory, that different folding pathways may become dominant under different folding conditions. In more stable folding conditions, uniformly native-like compactness is achieved during folding to IL, whereas in less stable conditions, uniformly native-like compactness is achieved only later during the folding of IL to N.     

Lactate Transport and Receptor Actions in Retina: Potential Roles in Retinal Function and Disease

In retina, like in brain, lactate equilibrates across cell membranes via monocarboxylate transporters and in the extracellular space by diffusion, forming a basis for the action of lactate as a transmitter of metabolic signals. In the present paper, we argue that the lactate receptor GPR81, also known as HCAR1, may contribute importantly to the control of retinal cell functions in health and disease. GPR81, a G-protein coupled receptor, is known to downregulate cAMP both in adipose and nervous tissue. The receptor also acts through other down-stream mechanisms to control functions, such as excitability, metabolism and inflammation. Recent publications predict effects of the lactate receptor on neurodegeneration. Neurodegenerative diseases in retina, where the retinal ganglion cells die, notably glaucoma and diabetic retinopathy, may be linked to disturbed lactate homeostasis. Pilot studies reveal high GPR81 mRNA in retina and indicate GPR81 localization in Müller cells and retinal ganglion cells. Moreover, monocarboxylate transporters are expressed in retinal cells. We envision that lactate receptors and transporters could be useful future targets of novel therapeutic strategies to protect neurons and prevent or counteract glaucoma as well as other retinal diseases.     

Modeling the interactions between stimulation and physiologically induced APs in a mammalian nerve fiber: dependence on frequency and fiber diameter

Electrical stimulation of nerve fibers is used as a therapeutic tool to treat neurophysiological disorders. Despite efforts to model the effects of stimulation, its underlying mechanisms remain unclear. Current mechanistic models quantify the effects that the electrical field produces near the fiber but do not capture interactions between action potentials (APs) initiated by stimulus and APs initiated by underlying physiological activity. In this study, we aim to quantify the effects of stimulation frequency and fiber diameter on AP interactions involving collisions and loss of excitability. We constructed a mechanistic model of a myelinated nerve fiber receiving two inputs: the underlying physiological activity at the terminal end of the fiber, and an external stimulus applied to the middle of the fiber. We define conduction reliability as the percentage of physiological APs that make it to the somatic end of the nerve fiber. At low input frequencies, conduction reliability is greater than 95% and decreases with increasing frequency due to an increase in AP interactions. Conduction reliability is less sensitive to fiber diameter and only decreases slightly with increasing fiber diameter. Finally, both the number and type of AP interactions significantly vary with both input frequencies and fiber diameter. Modeling the interactions between APs initiated by stimulus and APs initiated by underlying physiological activity in a nerve fiber opens opportunities towards understanding mechanisms of electrical stimulation therapies.     

Are the well-fed less thirsty? Effects of drought and salinity on New Zealand mangroves

饱食则耐渴？论干旱和盐度对新西兰红树林的影响 尽管已有大量的研究考察了非生物胁迫因素对植物的影响，但是我们对干旱造成植物死亡的机理尚无定论，而对多种胁迫因子之间的相互作用更是知之甚少。非结构性碳水化合物(NSCs)在防止或延缓因干旱造成死亡方面的作用正日益引人关注。在本研究中，我们探讨了NSCs在缓解新西兰红树林(Avicennia marina subsp. australasica)受干旱和盐度影响时所起的作用。首先，我们对植物体内的NSC 水平进行了实验调控，随后将植株置于不同的干旱和盐度组合环境中培育。研究结果表明，在高盐度且高度干旱的条件下，高NSC水平组(H-NSC)的植物生长速率和存活率分别比低NSC水平组(L-NSC)的高出2和3倍。在高盐度且高度干旱的条件下培育了12周后，H-NSC组植株的茎杆导水率(281 ± 50 mmol cm⁻¹ s⁻¹ MPa⁻¹)高于L-NSC组植株(134 ± 40 mmol cm⁻¹ s⁻¹ MPa⁻¹)。尽管淀粉含量保持相对稳定，但H-NSC组植株茎杆中的可溶性糖含量在高盐度且高度干旱条件下的第8周时比第12周时高出20%。这些研究结果表明：1) NSCs对于缓解因干旱和与之相关的高盐度造成的较低土壤水势的影响具有重要作用；2)旱、盐联合胁迫下的植株生长受到库的限制。     

Interaction of sesamol (3,4-methylenedioxyphenol) with tyrosinase and its effect on melanin synthesis

Sesamin, sesamolin (lignans) and sesamol - from sesame seed (Sesamum indicum L.) - are known for their health promoting properties. We examined the inhibition effect of sesamol, a phenolic degradation product of sesamolin, on the key enzyme in melanin synthesis, viz. tyrosinase, in vitro. Sesamol inhibits both diphenolase and monophenolase activities with midpoint concentrations of 1.9 μM and 3.2 μM, respectively. It is a competitive inhibitor of diphenolase activity with a K_i of 0.57 μM and a non-competitive inhibitor of monophenolase activity with a K_i of 1.4 μM. Sesamol inhibits melanin synthesis in mouse melanoma B16F10 cells in a concentration dependant manner with 63% decrease in cells exposed to 100 μg/mL sesamol. Apoptosis is induced by sesamol, limiting proliferation. This study of the chemistry and biology of lignans, in relation to the mode of action of bioactive components, may open the door for drug applications targeting enzymes.     

In vitro shoot growth, direct organogenesis and somatic embryogenesis promoted by silver nitrate in Coffea dewevrei

Direct differentiation of shoot buds in Coffea dewevrei was evident from the seedling shoots with collar region and also from collar region end of hypocotyl segments in presence of 40 μM AgNO₃, 8.88 μM of BA and 2.85 μM of IAA. Apart from this, shoot end of hypocotyl explants mainly supported yellow friable callus or somatic embryos. Subsequent transfer to the same medium induced secondary somatic embryogenesis. The collar region of the hypocotyl explants not only showed direct organogenesis by producing 1–3 shoots per explant and also able to produce globular somatic embryos and embryogenic yellow friable callus. Similarly direct somatic embryogenesis along with yellow friable embryogenic callus formation on 1/2 strength MS medium comprising 1.47 μM IAA, 2.22 μM BA and 40 μM AgNO₃ was noticed from cut portion of in vitro leaf and stalk of regenerated plants. The microshoots rooted well upon subculturing onto the same medium in 6 weeks and showed 60 % survival in green house and resumed growth upon hardening.     

Inappropriate Detection of a Supraventricular Tachycardia as Dual Tachycardia by the PR Logic™ Algorithm

Tachycardia detection and therapy algorithms in Implantable Cardioverter-Defibrillators (ICD) reduce, but do not eliminate inappropriate ICD shocks. Awareness of the pros and cons of a particular algorithm helps to predict its utility in specific situations. We report a case where PR logic™, an algorithm commonly used in currently implanted ICDs to differentiate supraventricular tachycardia (SVT) from ventricular tachycardia resulted in inappropriate detection and shock for an SVT, and discuss several solutions to the problem.     

Endogenous polyamine profiles in different tissues of <Emphasis Type="Italic">Coffea</Emphasis> sp., and their levels during the ontogeny of fruits

Polyamines are essential compounds for growth and development in plants. An attempt has been made to find out the endogenous polyamine profiles in various parts and during the ontogeny of fruit formation of two commercially important Coffea species viz., arabica and canephora. Putrescine (Put), spermine (Spm) and spermidine (Spd) are the predominant polyamines during the ontogeny of fruit and their level increased with the advancement of fruit development. However, in the initial stages of flower and fruit development Spm levels were found to be decreased. Elevated levels of major polyamines Put, Spd, and Spm were observed in zygotic embryos than in somatic embryos. Along with this cadavarine (Cad) and other biogenic amines viz., tyramine (Tyr) and tryptamine (Try) were also found during the ontogeny of fruit in C. canephora. In this study the enodogenous polyamine profiles in coffee tissues and beans have been addressed.     

Aldose reductase expression contributes in sorbitol accumulation and 4-hydroxynon-2-enal detoxification in two foxtail millet (<Emphasis Type="Italic">Setaria italic</Emphasis>a L.) cultivars with different salt stress tolerance

Salt stress is a major environmental factor in arid and semi-arid regions and influences many aspects of plant development. Salinity results in generation of various free radicals that can potentially damage the cellular constituents in plants. Plants were able to effectively reduce the damage caused by these free radicals by a way of enzymatic and non enzymatic defenses for better survival. Enhanced efficacy of antioxidative enzyme systems such as superoxide dismutase, catalase and ascarbate peroxidase was well documented in several plants subjected to salinity stress. Aldose reductase, an important enzyme is also known to detoxify free toxic aldehydes like HNE (4-hydroxynon-2-enal, a hydroxyalkenal) generated during oxidative damage of cellular components. However, the role of aldose reductase to impart tolerance to the plants under salt stress has not been studied in any detail. Therefore, we were interested to study the aldose reductase activity and its expression to gain an insight into the role of aldose reductase in imparting tolerance to foxtail millet cultivars (viz., Cv. Prasad and Lepakshi) subjected to NaCl stress. We observed that subjecting foxtail millets to increasing levels of stress significantly increased aldose reductase activity and in a way that correlated positively with elevated levels of sorbitol, an osmotic solute involved in osmotic balance. This suggests the involvement of aldose reductase in sorbitol biosynthesis in foxtail millet. Additionally, we observed higher levels of 4-hydroxynon-2-enal, a major lipid peroxidation product, in the susceptible than the tolerant cultivar indicating a higher proportion of cellular damage in former than in the latter. This high content of 4-hydroxynon-2-enal in the susceptible cultivar was negatively correlated with its aldose reductase activity, indicating the involvement of aldose reductase in detoxification of 4-hydroxynon-2-enal. 4-hydroxynon-2-enal is also known to be a catalyzed by glutathione-S-transferase. Glutathione-S-transferase activity was found higher in the tolerant foxtail millet than the sensitive cultivar: the tolerant cultivar showed a low 4-hydroxynon-2-enal content compared to the susceptible cultivar, demonstrating a possible mechanism for detoxification of 4-hydroxynon-2-enal by two enzymes, glutathione-S-transferase and aldose reductase in plants under stressful conditions.     

Potent induction of Arabidopsis thaliana flowering by elevated growth temperature

The transition to flowering is an important event in the plant life cycle and is modulated by several environmental factors including photoperiod, light quality, vernalization, and growth temperature, as well as biotic and abiotic stresses. In contrast to light and vernalization, little is known about the pathways that mediate the responses to other environmental variables. A mild increase in growth temperature, from 23 °C to 27 °C, is equally efficient in inducing flowering of Arabidopsis plants grown in 8-h short days as is transfer to 16-h long days. There is extensive natural variation in this response, and we identify strains with contrasting thermal reaction norms. Exploiting this natural variation, we show that FLOWERING LOCUS C potently suppresses thermal induction, and that the closely related floral repressor FLOWERING LOCUS M is a major-effect quantitative trait locus modulating thermosensitivity. Thermal induction does not require the photoperiod effector CONSTANS, acts upstream of the floral integrator FLOWERING LOCUS T, and depends on the hormone gibberellin. Analysis of mutants defective in salicylic acid biosynthesis suggests that thermal induction is independent of previously identified stress-signaling pathways. Microarray analyses confirm that the genomic responses to floral induction by photoperiod and temperature differ. Furthermore, we report that gene products that participate in RNA splicing are specifically affected by thermal induction. Above a critical threshold, even small changes in temperature can act as cues for the induction of flowering. This response has a genetic basis that is distinct from the known genetic pathways of floral transition, and appears to correlate with changes in RNA processing.