Dot-blot hybridization and RT-PCR detection of extra small virus (XSV) associated with white tail disease of prawn Macrobrachium rosenbergii

The availability of specific and reliable detection methods is essential for monitoring the health status of farmed species, particularly for viral diseases. Extra small virus (XSV), a virus-like particle, is associated with Macrobrachium rosenbergii Noda virus (MrNV) in white tail disease (WTD) of M. rosenbergii. We developed 2 genome-based detection methods for the identification of XSV, namely dot-blot hybridization and a single-step RT-PCR. Detection limits were established and are ca. 2.5 pg and 5 fg of viral RNA for dot-blot hybridization and RT-PCR, respectively. Application of the methods to field samples indicated that some animals positively diagnosed with MrNV did not contain XSV, at least within the detection limit of the methodology. This raises the question of the actual role of XSV and its interactions with MrNV in WTD of M. rosenbergii.     

SCOPmap: Automated assignment of protein structures to evolutionary superfamilies

Background  

Inference of remote homology between proteins is very challenging and remains a prerogative of an expert. Thus a significant drawback to the use of evolutionary-based protein structure classifications is the difficulty in assigning new proteins to unique positions in the classification scheme with automatic methods. To address this issue, we have developed an algorithm to map protein domains to an existing structural classification scheme and have applied it to the SCOP database.     

Male bimaturism and reproductive success in Sumatran orang-utans

Although orang-utans live solitary lives most of the time, theyhave a complex social structure and are characterized by extremesexual dimorphism. However, whereas some adult male orang-utansdevelop full secondary sexual characteristics, such as cheekflanges, others may stay in an "arrested" unflanged conditionfor up to 20 years after reaching sexual maturity. The resultis a marked bimaturism among adult males. Flanged males allowfemales to overlap with their home range and often toleratethe presence of unflanged males. However, wherever possibleflanged males actively prevent unflanged males from copulatingwith females. Two competing hypotheses, previously untested,have been advanced to explain male reproductive behavior andbimaturism in orang-utans: (1) the "range-guardian" hypothesis,which asserts that the flanged males are postreproductive anddefend a range in which they tolerate sexually active, unflangedmale relatives; and (2) the "female choice" hypothesis, whichasserts that flanged males tolerate unflanged males in their range because they rely on female preference to favor flangedmales. We investigated these hypotheses and a third hypothesisthat the two male morphs represent co-existing alternativemale reproductive strategies ("sitting, calling, and waiting"for flanged males versus "going, searching, and finding" forunflanged males). Fecal samples were collected from a well-studiedpopulation in Indonesia, and eight human microsatellites wereanalyzed for 30 individuals that have been behaviorally monitoredfor up to 27 years. By carrying out paternity analysis on 11offspring born over 15 years, we found that unflanged malesfathered about half (6) of the offspring. Relatedness betweensuccessful unflanged males and resident dominant males wassignificantly lower than 0.5, and for some unflanged/flangedmale pairs, relatedness values were negative, indicating thatunflanged males are not offspring of the flanged males.     

Phytosterol feeding induces alteration in testosterone metabolism in rat tissues

The objective of the present study was to examine the metabolism of testosterone in rat tissues as influenced by dietary phytosterols. Testosterone metabolism includes reductions to more active metabolites or aromatization to estrogen. Both higher levels of androgens and estrogens are implicated as risk factors in the development of prostate cancer. Tissues studied included liver, testis, and prostate. Feeding 2% phytosterols with 0.2% cholic acid to rats for 22 days resulted in a 33% reduction in serum testosterone compared with controls, which received only 0.2% cholic acid in the diet. 5-α-Reductase was reduced by 41 to 44% and 33% in the liver and prostate, respectively. No effect of phytosterols was observed in the testis. Only aromatase activity of the prostate was reduced by 55% upon feeding phytosterols. It was concluded that dietary phytosterols may reduce the risk of prostate cancer by lowering the activities of the enzymes of testosterone metabolism.     

Platelet Recruitment Promotes Keratocyte Repopulation following Corneal Epithelial Abrasion in the Mouse

Corneal abrasion not only damages the epithelium but also induces stromal keratocyte death at the site of injury. While a coordinated cascade of inflammatory cell recruitment facilitates epithelial restoration, it is unclear if this cascade is necessary for keratocyte recovery. Since platelet and neutrophil (PMN) recruitment after corneal abrasion is beneficial to epithelial wound healing, we wanted to determine if these cells play a role in regulating keratocyte repopulation after epithelial abrasion. A 2 mm diameter central epithelial region was removed from the corneas of C57BL/6 wildtype (WT), P-selectin deficient (P-sel^-/-), and CD18 hypomorphic (CD18^hypo) mice using the Algerbrush II. Corneas were studied at 6h intervals out to 48h post-injury to evaluate platelet and PMN cell numbers; additional corneas were studied at 1, 4, 14, and 28 days post injury to evaluate keratocyte numbers. In WT mice, epithelial abrasion induced a loss of anterior central keratocytes and keratocyte recovery was rapid and incomplete, reaching ~70% of uninjured baseline values by 4 days post-injury but no further improvement at 28 days post-injury. Consistent with a beneficial role for platelets and PMNs in wound healing, keratocyte recovery was significantly depressed at 4 days post-injury (~30% of uninjured baseline) in P-sel^-/- mice, which are known to have impaired platelet and PMN recruitment after corneal abrasion. Passive transfer of platelets from WT, but not P-sel^-/-, into P-sel^-/- mice prior to injury restored anterior central keratocyte numbers at 4 days post-injury to P-sel^-/- uninjured baseline levels. While PMN infiltration in injured CD18^hypo mice was similar to injured WT mice, platelet recruitment was markedly decreased and anterior central keratocyte recovery was significantly reduced (~50% of baseline) at 4–28 days post-injury. Collectively, the data suggest platelets and platelet P-selectin are critical for efficient keratocyte recovery after corneal epithelial abrasion.     

Biological stability of municipal solid waste from simulated landfills under tropical environment

Biological stability of the Municipal Solid Waste (MSW) is assessed under tropical climatic condition using landfill lysimeters. Various landfill operating conditions and two different substrates were employed. Solid waste samples collected during different time intervals of landfill operation assessed for volatile solids (VS), organic carbon (OC), specific oxygen uptake rate (SOUR), and water extractable components. Organic carbon achieved faster stabilization than the nitrogen content in MSW within the various landfill operating conditions. At the end of 960 days of lysimeter operation, the MSW from different landfills were aerobically and anaerobically stable and results comparable with compost. Further, bioreactor landfill given better biological stability and high methane content than other landfill operating conditions with continuous leachate treatment is compelling benefit.