Genetic diversity and distribution of Bradyrhizobium and Azorhizobium strains associated with the herb legume Zornia glochidiata sampled from across Senegal

Herb legumes have great potential for rehabilitation of semi-arid degraded soils in Sahelian ecosystems as they establish mutualistic symbiosis with N₂-fixing rhizobia. A phylogenetic analysis was performed for 78 root nodule bacteria associated with the common Sahelian herb legume Zornia glochidiata Reichb ex DC in Senegal. Based on ITS (rDNA16S-23S) and recA sequences, these strains were shown to belong to the two genera Bradyrhizobium and Azorhizobium. Strains of this latter, although frequent, formed small and ineffective nodules and suggested a parasitism rather than a symbiotic association. A potential negative effect of Azorhizobium on Zornia growth was tested for when inoculated alone or in association with a Bradyrhizobium strain. Bradyrhizobium isolates were distributed in four groups. Groups A and B were two sister clades in a larger monophyletic group also including Bradyrhizobium liaoningense, Bradyrhizobium yuanmingense, and Bradyrhizobium japonicum. Strains of cluster D fell in a sister clade of the photosynthetic Bradyrhizobium sp. group, including ORS278, whereas group C appeared to be divergent from all known Bradyrhizobium clusters. Amplified fragment length polymorphism (AFLP) clustering was congruent with ITS and recA phylogenies, but displayed much more variability. However, within the main Bradyrhizobium clades, no obvious relationship could be detected between clustering and geographical origin of the strains. Each sub-cluster included strains sampled from different locations. Conversely, Azorhizobium strains showed a tendency in the phylogeny to group together according to the site of sampling. The predominance of ineffective Azorhizobium strains in the nodules of Zornia roots, the large Bradyrhizobium genetic diversity and the geographical genetic diversity pattern are explored.     

The dynamics of hollowing in annually burnt savanna trees and its effect on adult tree mortality

Savanna trees often display significant hollows due to the combined action of fire and termites (N’Dri et al., J Trop Ecol 27:269–278, 2011). Observations have shown that internal cavities caused by termites in tree stems often result in external hollows under annual fire regimes, and it is quite possible that such hollows/fire interaction may increase the probability of trunk or big branch breakage and/or tree mortality. A study of individual tree and branch mortality as a function of prior termite and fire damage was undertaken in a West African savanna (Lamto, Côte d’Ivoire) where most of the trees naturally have hollows in their stems due to termite and fire interaction. Our goal was to examine the dynamics of hollowing and to determine whether hollowing significantly affected tree mortality. Branch and whole plant mortality were quantified for dominant tree species according to their initial hollow state and height. Four different responses were obtained depending on tree species: (1) mortality increased with cavity severity and tree size (Piliostigma thonningii), (2) mortality depended on tree size only (Bridelia ferruginea), (3) no mortality even after being hollowed by termites and externally damaged by fire (Crossopteryx febrifuga, the species with the highest proportion of individuals with hollows yet the greatest background survival time, 14 ± 2 years) and (4) high mortality, but few hollow trees suggesting a weak resistance to hollowing (Cussonia arborea which was insensitive to all the factors examined in this study). For species resistant to hollowing, tree mortality was rare; alternatively, for species prone to hollowing, whole trees died quickly and before the most severe hollow classes could be observed. Long-term demographic data yielded population-level mortality estimates of adult trees at least four times lower in fire-exclusion zones than that in fire-prone areas. Because hollow dynamics interact with fire in affecting adult mortality of some dominant tree species, fire management is important for a sustainable woody component of these savannas.     

Reparation en urgence differee des ruptures traumatiques de l’urethre posterieur

The management of posterior urethra injuries is still subject of controversies. Some authors recommend primary or deferated emergency repair operation, while some others wait for about three months and repair the urethral stenosis. The analysis of a series of fifteen cases shows that when patients are treated by deferated emergency operation, the results are usually good. However, when repair is performed later, results are less good, and the rate of sexual impotency is higher in this group. We conclude that deferated emergency repair operation is the best way to manage disrupted posterior urethra.     

Réparation juridique du préjudice sexuel dans les ruptures traumatiques de l'urètre

After traumatic posterior urethral rupture, sexual prejudice can be evaluated with some criteria among which results of intracavernous injections must be discussed. The check up of the medical expert must be methodic and meticulous because only direct prejudice is compensable.     

The Relevance of a Novel Quantitative Assay to Detect up to 40 Major Streptococcus pneumoniae Serotypes Directly in Clinical Nasopharyngeal and Blood Specimens

For epidemiological and surveillance purposes, it is relevant to monitor the distribution and dynamics of Streptococcus pneumoniae serotypes. Conventional serotyping methods do not provide rapid or quantitative information on serotype loads. Quantitative serotyping may enable prediction of the invasiveness of a specific serotype compared to other serotypes carried. Here, we describe a novel, rapid multiplex real-time PCR assay for identification and quantification of the 40 most prevalent pneumococcal serotypes and the assay impacts in pneumonia specimens from emerging and developing countries. Eleven multiplex PCR to detect 40 serotypes or serogroups were optimized. Quantification was enabled by reference to standard dilutions of known bacterial load. Performance of the assay was evaluated to specifically type and quantify S. pneumoniae in nasopharyngeal and blood samples from adult and pediatric patients hospitalized with pneumonia (n = 664) from five different countries. Serogroup 6 was widely represented in nasopharyngeal specimens from all five cohorts. The most frequent serotypes in the French, South African, and Brazilian cohorts were 1 and 7A/F, 3 and 19F, and 14, respectively. When both samples were available, the serotype in blood was always present as carriage with other serotypes in the nasopharynx. Moreover, the ability of a serotype to invade the bloodstream may be linked to its nasopharyngeal load. The mean nasopharyngeal concentration of the serotypes that moved to the blood was 3 log-fold higher than the ones only found in the nasopharynx. This novel, rapid, quantitative assay may potentially predict some of the S. pneumoniae serotypes invasiveness and assessment of pneumococcal serotype distribution.     

Site-specific excision of integrated polyoma DNA

Cyp cells are permissive murine cells carrying a thermosensitive polyoma virus genome that remains integrated at 39 degrees C, but is effectively excised and replicated after transfer to 33 degrees C. In rare subclones of the Cyp line, temperature shift-down yields predominantly homogeneous populations of chimeric molecules that appear to reflect the circularization of defined segments of DNA spanning one of the junctions between the integrated viral genome and the adjacent cellular DNA. Such accurate and frequent excision requires a specific recombination mechanism. We examined both the cellular and the viral sequences that cross-over to generate one of these chimeric molecules, Rm I. The homology at the cross-over site is one of 1 or 2 base pairs at most; patches of homology, amounting in total to 19 or 20 base pairs, are found in perfect register on both sides of this site; and the two stretches of DNA that are joined to form RM I contain similar 12-14 base pair sequences (5'- CTCCTTTACAGAGG -3' and 5'- CTCCTTTCAAGG -3') in opposite orientations.