Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs

Classic semiquantitative proteomic methods have shown that all organisms respond to a mild heat shock by an apparent massive accumulation of a small set of proteins, named heat-shock proteins (HSPs) and a concomitant slowing down in the synthesis of the other proteins. Yet unexplained, the increased levels of HSP messenger RNAs (mRNAs) may exceed 100 times the ensuing relative levels of HSP proteins. We used here high-throughput quantitative proteomics and targeted mRNA quantification to estimate in human cell cultures the mass and copy numbers of the most abundant proteins that become significantly accumulated, depleted, or unchanged during and following 4 h at 41 °C, which we define as mild heat shock. This treatment caused a minor across-the-board mass loss in many housekeeping proteins, which was matched by a mass gain in a few HSPs, predominantly cytosolic HSPCs (HSP90s) and HSPA8 (HSC70). As the mRNAs of the heat-depleted proteins were not significantly degraded and less ribosomes were recruited by excess new HSP mRNAs, the mild depletion of the many housekeeping proteins during heat shock was attributed to their slower replenishment. This differential protein expression pattern was reproduced by isothermal treatments with Hsp90 inhibitors. Unexpectedly, heat-treated cells accumulated 55 times more new molecules of HSPA8 (HSC70) than of the acknowledged heat-inducible isoform HSPA1A (HSP70), implying that when expressed as net copy number differences, rather than as mere “fold change” ratios, new biologically relevant information can be extracted from quantitative proteomic data. Raw data are available via ProteomeXchange with identifier PXD001666.

Electronic supplementary material

The online version of this article (doi:10.1007/s12192-015-0583-2) contains supplementary material, which is available to authorized users.     

The effects of boron containing peptides on L1210 lymphoid leukemia metabolism

Summary The purpose of this study was to establish the efficacy and mode of action of peptide boron derivatives as antineoplastic agents and to evaluate their safety in vivo. Boron-containing phenylalanine and tyrosine methyl esters were found to be potent cytotoxic agents in a number of murine and human cancer cell lines. DNA, RNA and protein syntheses were inhibited by selected agents, e.g. [(trimethylamine boryl)carbonyl]-phenylalanine-acetyl ester (9) andN-acetyl-p-boron-phenyl-alanyl-phenlalanine-methyl ester (10), in L₁₂₁₀ lymphoid leukemia cells. IMP dehydrogenase, OMP decarboxylase, m-RNA, t-RNA, r-RNA polymerase and ribonucleoside reductase activities were inhibited. d(CTP) levels were reduced. DNA strand scission occurred after 24 hr incubation. Acute toxicity studies in mice demonstrated that the key derivative was safe at therapeutic levels with no effects on histology of major organs, hematopoietic parameters and clinical values.     

NUTRIENT SEQUESTRATION,BIOMASS PRODUCTION BY MICROALGAE AND PHYTOREMEDIATION OF SEWAGE WATER

The present work was aimed at analysing the role of inoculated microalgae in nutrient dynamics, bioremediation and biomass production of sewage water. Preliminary microscopic analyses of sewage water revealed the presence of different algal groups, with predominance of Cyanophyta. Among the inoculated strains, Calothrix showed highest dry cell weight (916.67 mg L^?1), chlorophyll and carotenoid content in tap water + sewage water (1:1) treatment. Significant removal of NO₃-N ranging from 57–78% and PO₄-P (44–91%) was recorded in microalgae inoculated tap water + sewage water. The total dissolved solids and electrical conductivity of tap water + sewage water after incubation with Calothrix sp. decreased by 28.5 and 28.0%, accompanied by an increase in dissolved oxygen from 4.4 to 6.4 mg L^?1 on the 20th day. Our investigation revealed the robustness of Calothrix sp. in sequestering nutrients (N and P), improving water quality and proliferating in sewage water.     

The effect of polyamines on leaf senescence in two diverse rose species

Polyamines (PAs) retarded the senescence of leaf discs of two diverse speciesof rose viz., Rosa bourboniana andRosa damascena, while polyamine biosynthetic inhibitorsdifluoromethylornithine (DFMO), difluoromethylarginine (DFMA), methylglyoxal-bis(guanylhydrazone) (MGBG) and abscisic acid (ABA) promoted senescence. Sperminewas significantly the most effective polyamine in retarding senescence inR. bourboniana while MGBG and DFMA were more prominent inaccelerating senescence in R. damascena and R.bourboniana respectively. Protein and RNA content were significantlyhigher in polyamine treated leaf discs compared to those treated with polyaminebiosynthetic inhibitors and ABA. Total and reducing sugars decreased under alltreatments while the starch content increased significantly only in polyaminetreated leaf discs. Peroxidase and cellulase activities were retarded bypolyamine treatments and accelerated by polyamine biosynthetic inhibitors andABA. The role of PAs is discussed in relation to senescence.