A family of E. coli expression vectors for laboratory scale and high throughput soluble protein production

Background  

In the past few years, both automated and manual high-throughput protein expression and purification has become an accessible means to rapidly screen and produce soluble proteins for structural and functional studies. However, many of the commercial vectors encoding different solubility tags require different cloning and purification steps for each vector, considerably slowing down expression screening. We have developed a set of E. coli expression vectors with different solubility tags that allow for parallel cloning from a single PCR product and can be purified using the same protocol.     

道路及道路施工对若尔盖高寒湿地小型兽类及鸟类生境利用的影响

为考察道路和道路施工对若尔盖高寒泥炭湿地野生动物的影响,我们在穿过若尔盖湿地的2条道路两侧,对距道路不同距离的小型兽类和鸟类分布进行了调查,其中小型兽类调查深度距离公路800m,鸟类调查深度距离公路400m。施工中的国道213线路两侧黑唇鼠兔(Ochotonacurzoniae)洞穴高密度区域离道路更远,在道路两侧400m处达到峰值,极显著高于距离道路10m处的密度;而在正常运营中的省道209线两侧,其洞穴密度在200m处达到最高值,与其他距离的洞穴密度没有显著性差异。无论在国道213线还是省道209线,道路对高原鼢鼠(Myospalaxbaileyi)洞穴分布的影响均未达到显著性水平。在正常运营的省道209线两侧,高原鼢鼠土堆密度最高区域为距离道路100m处;而施工的道路两侧高原鼢鼠土堆密度最高区域则出现在距离道路10m处,第二高峰出现在距离道路400m处。雀形目和隼形目鸟类的分布均呈现距离道路越远密度越高的趋势,但是只有距离道路400m处雀形目鸟类的密度显著高于50m与200m处;距离道路不同距离的样线中隼形目鸟类密度和物种丰富度没有显著性差异。由此可以看出,施工中的道路对黑唇鼠兔的影响区域比正常运营的道路更宽,其公路效应域达到400m,400m的调查深度对鸟类尤其是隼形目鸟类来说可能还略有不足。但是,根据此深度的调查可以确定施工中的国道213线雀形目和隼形目鸟类的公路效应域宽度大于400m。     

Determination of phylogenetic position ofPipizini (Diptera: Syrphidae): based on molecular biological and morphological data

Based on the sequence analysis of 5.8S subunit and internal transcribed spacers (ITS) of ribosomal RNA gene (rDNA), the molecular phylogenetic tree of representative species of Pipizini and three groups of Syrphidae with different feeding habits (seven species belong to six genera) was constructed. Meanwhile, the phylogenetic tree of tribes (including Pipizini and other 17 tribes of Syrphidae) was constructed using morphological characteristics of adults and larvae and the number of chromosomes. Both the results show that the relationship between Pipizini and predatory groups is closer than that between Pipizini and saprophagous groups. So it is suggested that Pipizini be transferred from Milesiinae to Syrphinae.     

Changes in the temperature sensitivity of SOM decomposition with grassland succession: implications for soil C sequestration

Understanding the temperature sensitivity (Q₁₀) of soil organic matter (SOM) decomposition is important for predicting soil carbon (C) sequestration in terrestrial ecosystems under warming scenarios. Whether Q₁₀ varies predictably with ecosystem succession and the ways in which the stoichiometry of input SOM influences Q₁₀ remain largely unknown. We investigate these issues using a grassland succession series from free‐grazing to 31‐year grazing‐exclusion grasslands in Inner Mongolia, and an incubation experiment performed at six temperatures (0, 5, 10, 15, 20, and 25°C) and with four substrates: control (CK), glucose (GLU), mixed grass leaf (GRA), and Medicago falcata leaf (MED). The results showed that basal soil respiration (20°C) and microbial biomass C (MBC) logarithmically decreased with grassland succession. Q₁₀ decreased logarithmically from 1.43 in free‐grazing grasslands to 1.22 in 31‐year grazing‐exclusion grasslands. Q₁₀ increased significantly with the addition of substrates, and the Q₁₀ levels increased with increase in N:C ratios of substrate. Moreover, accumulated C mineralization was controlled by the N:C ratio of newly input SOM and by incubation temperature. Changes in Q₁₀ with grassland ecosystem succession are controlled by the stoichiometry of newly input SOM, MBC, and SOM quality, and the combined effects of which could partially explain the mechanisms underlying soil C sequestration in the long‐term grazing‐exclusion grasslands in Inner Mongolia, China. The findings highlight the effect of substrate stoichiometry on Q₁₀ which requires further study.     

叉蕨科30种植物叶表皮形态特征研究

利用光镜对叉蕨科7属30种植物叶表皮形态特征进行详细观察研究。结果显示：（1）叉蕨科30种植物的叶上表皮和下表皮细胞形状均为不规则型,垂周壁式样为深波状或浅波状,具单晶或针晶;上表皮细胞的长宽比为1.62~4.0,下表皮细胞的长宽比为1.63~3.06。（2）在30种植物中共观察到7种气孔器类型,分别为：极细胞型、腋下细胞型、聚合极细胞型、聚腋下细胞型、不等细胞型、无规则四细胞型和不规则型,每种植物分别具有4~7种气孔器类型,均为下生型气孔;气孔长宽比为1.22~1.91,气孔密度为8~76个/mm²,气孔指数为3.9%~25.7%。（3）基于气孔器类型组成进行聚类分析,可将30种植物分成3个类群。（4）对叶表皮形态特征分析认为,轴脉蕨属应介于叉蕨属和肋毛蕨属之间,且与叉蕨属关系更近;叉蕨属的范畴还有待进一步研究;支持将肋毛蕨属从叉蕨科中分离出来置于鳞毛蕨科,但不支持黄腺羽蕨属归入鳞毛蕨科。     

C(i,j) matrix: a better numerical characterization for graphical representations of biological sequences

We find that the traditional numerical characterizations of biological sequences, such as E matrix, D/D matrix, L/L matrix and their "high order" matrices, have their limitations to characterize the biological sequences exactly, but they are widely used to analyze the biological sequences. Here, we propose a better numerical characterization for graphical representations of biological sequences, C(i,j) matrix. It is associated with the curvature of every point and has many advantages: (1) It can characterize the graphical representations for DNA sequences exactly, because it can overcome the limitation of the traditional matrices. (2) If we choose an appropriate fixed point, we can make the elements of the C(i,j) matrix less than or equal to 1.     

Synthesis of andrographolide derivatives: a new family of alpha-glucosidase inhibitors

Andrographolide (1), the cytotoxic agent of the plant Andrographis paniculata, was subjected to semi-synthetic studies leading to a series of new derivatives, a novel family of glucosidase inhibitors. Nicotination of 3,19-hydroxyls in 15-alkylidene andrographolide derivatives (9) was favorable to alpha-glucosidase inhibition activity. Among them, 15-p-chlorobenzylidene-14-deoxy-11,12-didehydro-3,19-dinicotinateandrographolide (11c) was a very potent inhibitor against alpha-glucosidase with an IC50 value of 6 microM. However, all compounds concerned for beta-glucosidase showed no inhibition. All compounds synthesized were characterized by the analysis of NMR, IR, HRMS spectra and the stereochemistry of 2 was confirmed by X-ray analysis.