Carriage of 2R allele at VNTR polymorphous site of <Emphasis Type="Italic">XRCC5</Emphasis> gene increases risk of multiple sclerosis in an Iranian population

The DNA damage has considerably raised in active MS lesions compared to normal brains, indicating the possible role of DNA repairing genes in MS. In the current study, we sought to highlight the association between genetic polymorphisms of XRCC5 and XRCC6 genes, involved in Double Strand Breaks (DSBs) repair, and MS susceptibility. A total of 235 Iranian individuals; including 113 MS patients and 122 healthy controls were participated in this study. They were genotyped for the XRCC5 VNTR polymorphism by polymerase chain reaction (PCR). The genotype analysis of the XRCC6–61C>G polymorphism was performed using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technique. The genotypic frequency of 2R/2R in the XRCC5 VNTR polymorphism was significantly higher in MS patients than controls (p = 0.048). The frequency of individuals with 2R allele was statistically significant in MS patients compared to controls (p = 0.041). Moreover, the frequency of 2R allele of the XRCC5 VNTR polymorphism was found to be significantly difference between MS patients and healthy groups (p = 0.003). The present study suggests that the presence of 2R allele in XRCC5 VNTR gene polymorphism may be a genetic risk factor for MS susceptibility in Iranian population.     

Haplotypes inside the beta-globin gene: use as new biomarkers for beta-thalassemia prenatal diagnosis in north of Iran

Background

Beta-thalassemia is common in the Mediterranean area as well as the Middle East and India. Official report in Iran revealed the average prevalence rate of carriers about 4%. More than 20 restriction fragment length polymorphisms (RFLPs) are known in the beta-globin gene cluster and used in the prenatal diagnosis (PND) services. Some of these locations may have low allele frequency and are not informative in the prenatal diagnosis. The current study aims to find new haplotypes and polymorphisms with high allele frequency in the local population.

Methods

Two thousand three hundred fifty samples (1,321 male and 1,029 female) from the northern Iran, whom suspected to be the carriers either for alpha or beta thalassemia and referred to the local diagnostic laboratory as a routine services were investigated during five years, (2010–2015). The beta-globin gene was sequenced for all samples.

Results

Heterozygosity for five SNPs in the beta-globin gene was calculated separately. 383 individuals (16.29%) showed no sign of nucleotide change in the beta-globin gene sequence. In total, codon2 (C/T) 31.72%, IVSII-16 (C/G) 31.72%, IVSII-74 (G/T) 54.71%, IVSII-81 (C/T) 19.47%, and IVSII-666 (T/C) 31.72% were seen respectively. Although all five polymorphisms showed reasonably high heterozygosity, IVSII-74 (G/T) [GG wild type (36.5%), G/T (54.71%) and TT (8.8%)] revealed the highest heterozygosity rate. Four combinations of these five SNPs were defined as new haplotypes named M1 to M4. ARMS-PCR also were designed and applied to detect IVSII-74 (G/T) nucleotide position.

Conclusions

This study represents an intragenic polymorphism, IVSII-74, a reliable position with high heterozygosity rates in Iranian population for PND analysis.

Trial registration

Retrospectively registered.

     

Current advances in biological production of propionic acid

Propionic acid and its derivatives are considered “Generally Recognized As Safe” food additives and are generally used as an anti-microbial and anti-inflammatory agent, herbicide, and artificial flavor in diverse industrial applications. It is produced via biological pathways using Propionibacterium and some anaerobic bacteria. However, its commercial chemical synthesis from the petroleum-based feedstock is the conventional production process bit results in some environmental issues. Novel biological approaches using microorganisms and renewable biomass have attracted considerable recent attention due to economic advantages as well as great adaptation with the green technology. This review provides a comprehensive overview of important biotechnological aspects of propionic acid production using recent technologies such as employment of co-culture, genetic and metabolic engineering, immobilization technique and efficient bioreactor systems.     

Bioleaching of Different Pyrites and Sphalerite in the Presence of Graphite

In this research work the effect of pyrite type and graphite on the pyrite and sphalerite dissolution rate was investigated, using a mixed culture of moderately thermophilic microorganisms. Two samples of: fine granular surface pyrite and crystalline euhedral pyrite were prepared from black shale and copper porphyry deposits, respectively. Results indicated that granular surface pyrite dissolution rate and Fe(III) concentration are significantly higher than those of crystalline euhedral pyrite. As a result, higher Zn extraction improvement was observed in the presence of granular surface pyrite. Addition of graphite to the experiments enhanced the microorganism population in leaching solution and accelerated crystalline euhedral pyrite and sphalerite bioleaching rate. Using graphite in the experiments resulted in catalytic effect of crystalline pyrite and sphalerite, in which, with graphite, the Fe extraction increased from 25.57% to 59.84% and Zn extraction was improved from 22.17% to 53.37%, for 28 days of bioleaching. The catalytic effect of graphite on crystalline euhedral pyrite and also sphalerite bioleaching could be attributed to the rising of the microorganism population or galvanic interaction in which graphite acted as the cathode and accelerated the anodic dissolution of pyrite and sphalerite.     

In Vivo Neutralization of Botulinum Neurotoxins Serotype E with Heavy-chain Camelid Antibodies (VHH)

Ingestion of botulinum neurotoxin (BoNT) results in botulism, a severe and frequent fatal disease known in the world. Current treatments rely on antitoxins, such as equine antitoxin and human botulism immunoglobulin. In some cases, side effects have been reported, including early anaphylactic shock and late serum sickness. Thus, diagnosis and treatment measure of BoNT are necessary and crucial. In the present study, a single-domain variable heavy-chain (VHH) antibody fragment was obtained from an immune dromedary phage display library against the putative binding domain of botulinum neurotoxin E (BoNT/E), a non-toxic 50-kDa fragment. The characteristics of nanobody VHH include excellent production, superior heat stability and specific binding capacity to soluble antigen without cross-reaction to other relevant or irrelevant antigens. A total of 150 ng/Kg of nanobody entirely neutralized 3LD50 of the BoNT/E in an in vivo challenge of the mice. This phenomenon indicates BoNT/E toxin neutralizing capacity of the produced nanobody. These results also suggest possession of unique properties by the nanobody applicable in diagnostics or therapeutic purposes.     

Production of Soluble and Functional Anti-TNF-α Fab' Fragment in Cytoplasm of E. coli: Investigating the Effect of Process Conditions on Cellular Biomass and Protein Yield Using Response Surface Methodology

The Protein Journal - With the increasing dominance of monoclonal antibodies (mAbs) in the biopharmaceutical industry and smaller antibody fragments bringing notable advantages over full-length...     

Influence of plant-growth-promoting bacteria on germination,growth and nutrients’ uptake of Onobrychis sativa L. under drought stress

The study was conducted to investigate the effect of growth-promoting bacteria (Azotobacter vinelandii?=?A, Pantoea agglomerans?+?P. putida?=?P, combined A?+?P, control) on the germination, growth and nutrient uptake of Onobrychis sativa L. under drought stress (field capacity (FC), 0.7?FC, 0.4?FC). The results showed that the highest and lowest germination rate (GR) was related to the P and control treatments in FC level, respectively. The maximum root and shoot length at the FC level was related to the treatment A. In the A?+?P treatment, the maximum shoot dry weight was measured in 0.7?FC level. The lowest root dry weight was also related to the A?+?P treatment in the FC level. Bio-fertilizers had the maximum impact in increasing the nutrients uptake in 0.7?FC and FC levels. The fertilizers in 0.7?FC and FC levels increased the plant traits and played no significant role in mitigating the effects of drought stress.     

Comparative floral development in Lamioideae (Lamiaceae): Marrubium,Phlomis, and Stachys

A comparative study of floral ontogeny and development was carried out on three genera (Marrubium L., Phlomis L., Stachys L.), representing three tribes of Lamioideae (Marrubieae, Phlomideae, Stachydeae) using epi-illumination light microscopy. The sequence of organ whorl appearance in all three genera is sepals, petals plus stamens, and carpels. Sepal appearance is reversed unidirectional starting from the adaxial side in all except Phlomis, which is unidirectional. Order of petal appearance is bidirectional in Marrubium and Stachys, and simultaneous in Phlomis. Stamens appear unidirectionally starting from the adaxial side in all except in Phlomis, which has an abaxial to adaxial unidirectional sequence. Significant developmental features distinguishing the three genera from each other include (1) weakly monosymmetric, elongated calyx tube, five-lobed corolla, divergent anthers with thecae transverse to the filament, unequally bifid stigma and ovary with glandular hairs in Marrubium; (2) actinomorphic hairy calyx, four-lobed corolla and unequally bifid stigma in Phlomis; and (3) glabrous calyx, equally bifid stigma and symmetric disc nectary in Stachys. Our results indicate some potential for floral ontogenetic features in delimiting the different tribes. The hypothetical evolutionary pathway of organogenesis sequences is discussed.