Coronal oscillations and internal loop structure

The transverse oscillations of a coronal magnetic loop whose ends are rigidly fixed in the photosphere are investigated. The loop is assumed to be inhomogeneous and to comprise two internal structural components: a central dense hot filament and a coaxial rarefied shell around it, in which the plasma density is lower than the density of the surrounding coronal plasma. The Alfvén speed in the shell, V_Am, is higher than that in the central filament and in the corona: V_Am>V_Ae>V_Ai. It is shown that, in the perfectly conducting plasma approximation, such a loop can generate two fast magnetosonic waves. The higher velocity wave is emitted in a radial direction, thereby ensuring the effect of the radiative damping of oscillations at the frequency of the m=1 cylindrical mode. The results of calculating the effect of radiative losses show that, for typical loop parameters (corresponding to those of the loops observed in the solar corona), the quality factor of oscillations may be fairly low (Q≈40). Under the conditions in question, the second (lower velocity) fast magnetosonic wave is not emitted (in contrast to the first) but rather turns out to be trapped in the magnetic flux tube.     

<Emphasis Type="Italic">Yersinia pseudotuberculosis</Emphasis> mutant OmpF porins with deletions of the external loops: genetic constructions design,expression, isolation and refolding

Yersinia pseudotuberculosis outer membrane (OM) recombinant mutant OmpF porins with deletions of the external loops L1, L6 and L8 were obtained using site-directed mutagenesis of the recombinant plasmid including ompF gene. Heterologeous expression of the mutant proteins was carried out in strain Rosetta of Escherichia coli (Novagen, USA), porins with the deletions were isolated from the inclusion bodies. Oligomers of mutant porins were obtained as result of dialysis and ion-exchange chromatography. Spatial structure of the mutant proteins was found to have special features in comparison with that of the full-structured OmpF porin on the level of both secondary and tertiary structure. As shown using bilayer lipid membrane (BLM) technique the absence of the loops L1, L6 and L8 didn’t affect the conductivity level of Y. pseudotuberculosis porin channel. The absence of the loops mentioned above has a significant influence on the antigenic structure of the mutant porins as demonstrated using immunoblotting technique and ELISA.     

Isolation and characterization of OmpF-like porin from <Emphasis Type="Italic">Yersinia ruckeri</Emphasis>

The polypeptide profile of the porin protein fraction of Yersinia ruckeri, a Gram-negative bacterium causing yersiniosis in fish, has been shown to depend on cultivation temperature. OmpF-like porins are expressed mainly in the outer membrane (OM) of the “cold” variant (4°C) of the microorganism and OmpC-like proteins are expressed in the OM of the “warm” variant (37°C). Both types of porins are present in the OM of Y. ruckeri at room temperature. The OmpF-like porin of the “cold” variant was isolated and characterized. The molecular weight and primary structure of the protein were determined. The methods of optical spectroscopy (circular dichroism and intrinsic protein fluorescence) have shown that the protein has a spatial structure typical of β-structured porins from the OM of Gram-negative bacteria. The functional activity of isolated protein was characterized by the bilayer lipid membrane (BLM) technique. The most probable level of channel conductivity was 320 ± 60 pS, corresponding to the channel conductivity of OmpF porins of the genus Yersinia. The distinctive feature of OmpF porin from Y. ruckeri is high thermostability of its functionally active conformation: the protein forms stable pores in the BLM even after heating to 85°C.     

Effect of dehydration duration of apices on characteristics of in vitro plants of <Emphasis Type="Italic">Fragaria vesca</Emphasis> after cryopreservation

Effect of different duration of dehydration of the apices isolated from in vitro plants on genetic stability was investigated in regenerated plants of wild strawberry (Fragaria vesca L., var. alpine) recovered after cryopreservation according to a precultivation-dehydration protocol. Plant material belongs to a clone (cv. Reine des Vallees) that has been maintained in vitro for more than 25 years in Timiryazev Institute of Plant Physiology. It was shown that duration of desiccation the apices before freezing appreciably affected the rate of postcryogenic recovery of plant growth and coefficient of their subsequent propagation. After 5-h-long desiccation, apices were notable for the highest growth rate. The plants restored from such apices also had the highest coefficient of propagation. For DNA analysis, the samples of leaves were taken separately from each plant after hardening and after cryopreservation. According to the results of RAPD, ISSR, and REMAP analyses, the plants from the chosen clone of strawberry showed some genetic variation prior to cryopreservation (percentage of polymorphic fragments was 9.0%). Plant adaptation to cold did not change the level of genetic variation. Among postcryogenic regenerants, morphologically modified plant forms were not observed, with the level of DNA marker variation decreasing almost two times irrespective of the duration of dehydration. However, in one plant restored after 5-h-long dehydration and cryogenic freezing, a 1200 bp fragment of DNA was lacking, which was detected in all other examined samples (frequency of deviation was 0.9%). Earlier, we did not reveal plant polymorphism of investigated strawberry clone associated with this fragment. Probably, this modification of DNA resulted from the exposure of plant material to dehydration and freezing in liquid nitrogen.     

Chaperone Skp from <Emphasis Type="Italic">Yersinia pseudotuberculosis</Emphasis> exhibits immunoglobulin G binding ability

A low-molecular-weight cationic protein that can bind human and rabbit immunoglobulins G has been isolated from Yersinia pseudotuberculosis cells. This immunoglobulin binding protein (IBP) interacts with IgG Fc-fragment, the association constant of the resulting complex being 3.1 μM^?1. MALDI-TOF mass spectrometry analysis of IBP revealed its molecular mass of 16.1 kDa, and capillary isoelectrofocusing analysis showed pI value of 9.2. N-Terminal sequence determination by Edman degradation revealed the sequence of the 15 terminal amino acid residues (ADKIAIVNVSSIFQ). Tryptic hydrolysate of IBP was subjected to MALDI-TOF mass spectrometry for proteolytic peptide profiling. Based on the peptide fingerprint, molecular mass, pI, and N-terminal sequence and using bioinformatic resources, IBP was identified as Y. pseudotuberculosis periplasmic chaperone Skp. Using the method of comparative modeling a spatial model of Skp has been built. This model was then used for modeling of Skp complexes with human IgG1 Fc-fragment by means of molecular docking.     

Influence of gold nanoparticles on activation of human blood neutrophils

Activation of neutrophils in the presence of gold nanoparticles is accompanied by formation of free-radical peroxidation products, recorded as a flash of chemiluminescence. The basis for the activation mechanism has its origins most likely in the influence of the gold particles on the membrane surface potential of neutrophils. Assessment of changes in the fluorescence intensity of the negatively charged ANS probe on the surface of model membranes upon adding different concentrations of gold nanoparticles indicates a change in the membrane surface charge density, which can cause cell activation.     

Target cells for lithium in different forms within a heterogeneous hepatocarcinoma-29 population

Liver cancer is an aggressive and heterogeneous human tumor. Lithium compounds block proliferation and induce apoptosis of hepatocarcinoma cells, but cannot cause the death of an entire population of tumor cells. The aim of this study was to reveal morphological types of target cells for different lithium preparations on the basis of their action on hepatocarcinoma-29 cells. The viability of hepatocarcinoma-29 cells was assessed by the MTT test. A dose-dependent decrease in viability was revealed upon addition of native and nanosized lithium carbonate and citrate. Target cells for lithium salts were revealed based on the morphological criteria for five differentiation stages of hepatocarcinoma-29 cells. It was shown that hepatocarcinoma- 29 proliferating cells of differentiation stages I and II are the target cells for native and nanosized lithium citrate, while differentiated cells of differentiation stages III and IV are the target cells for nanosized lithium carbonate. It was revealed that hepatocarcinoma-29 cells are more sensitive to nanosized lithium salts rather than to their native forms. This makes it possible to affect tumor growth more effectively.     

OmpC-like porin from Yersinia pseudotuberculosis: Molecular characteristics, physico-chemical and functional properties

Pore-forming protein from the outer membrane of Yersinia pseudotuberculosis cultured at 37°C has been isolated and characterized. Comparative analysis of the primary and three-dimensional structures of this protein and of OmpC porin from E. coli was carried out, functional properties of these proteins have been studied using bilayer lipid membranes (BLM) technique. The degree of homology, molecular mass and pore-forming properties of the isolated porin was found to be closer to those of OmpC porin from E. coli than OmpF porin from Y. pseudotuberculosis. The value of the most probable conductivity of OmpC porin from Y. pseudotuberculosis (0.18 pS) in BLM corresponded to the conductivity of the native trimer of this protein. Using CD spectroscopy, the porins investigated were shown to belong to the β-structured proteins. Data of the primary structure and intrinsic protein fluorescence revealed essential differences in localization and microenvironment of tryptophan residues in the porins investigated. Participation of external loops L2 and L6 in the formation of the antigenic structure of OmpC porin from Y. pseudotuberculosis was demonstrated. On the basis of crystal structure of osmoporin from Klebsiella pneumoniae, three-dimensional models of the monomer and trimer of the Y. pseudotuberculosis porin were obtained. Using Web server AGGRESCAN, the localization of protein structure sites with the increased aggregation capability (hot spots) has been deter-mined. It turned out that some of these zones localize in the region of intramonomeric contacts in the porin trimer; however, a large part of them is located on the external surface of the β-barrel. The process of thermal denaturation has been studied and the melting points of the porins were determined. It was found that significant changes in the microenvironment of the indole fluorophores (especially tryptophan residues of spectral class I) took place in the process of the thermodenaturation of the proteins. These changes preceded the irreversible conformational transition observed for the E. coli porin at 77°C and for the Y. pseudotuberculosis porin at 70°C.     

Monitoring the seasonal dynamics of ecologically tolerable levels for water regime, temperature, and pH in water objects of the Lower Don River

The feasibility of ecological standardization of physicochemical factors that do not refer to concentrations of polluting substances (water regime, water temperature, and pH) is confirmed. The opportunity of standardization is provided with the approach developed by the authors, which is based on joint analysis of the data of biological and physicochemical monitoring. Additional opportunities provided by the method used for the analysis are connected with calculating the admissible influence values that vary in time. The seasonal dynamics of the obtained ecologically tolerable levels (ETL) for factors disturbing the well being of biological indicators is investigated. The water sample points are analyzed concerning their ecological well being or ill being depending on observance or nonobservance of ETL values.