An axial binding site in the Tetrahymena precursor RNA.

Previous studies allow the construction of three distinct models of the binding of G and arginine within the active site of the Tetrahymena self-splicing preribosomal precursor RNA. These models (base triple, axial I and axial II) are now distinguished by measurements on the specificity of RNAs with nucleotide substitutions at positions spanning the site. Because the semi-conserved unpaired nucleotide 263 has no effect on substrate or inhibitor selection by the Tetrahymena RNA we conclude that the axial I model is improbable. In contrast, data with substituted RNAs and nucleoside analogs suggest that nucleotide 265 makes a hydrogen bond with the substrate. Accordingly the active site appears axial because substrate contacts exist at more than one nucleotide on the 5' side of the P7 helix. The effects of this hydrogen bond are observable in cases where the donor or acceptor is on the RNA, whether nucleotide 265 is a purine or pyrimidine, or whether nucleotide 265 is mispaired, wobble paired or normally paired. This pattern is consistent with the axial II model. Molecular dynamics and energy minimization calculations lead to the same conclusions as these site-directed substitutions; the base triple and axial I models are unstable dynamically. Under thermal agitation, the third model site (axial II) is transformed to a related, but more stable structure, axial III. The axial III active site is characterized by the extrusion of the conserved bulged base 263 from the P7 helix, a semi-pocket for G base formed by stacking of nucleotide 262, and formation of all bonds to the G base originally proposed for both the base triple and axial II sites. Because of these hydrogen bonds the axial III site is also consistent with data on enzymatic specificity. The axial III model indicates an unforeseen capacity for pocket formation within the groove of an RNA helix, suggests that the site may be unusually flexible, and bears on a hypothesis concerning the origin of the genetic code.     

Kann die ?spezifisch dynamische Wirkung“ einen Beitrag zur Thermoregulation k?rnerfressender Singv?gel leisten?

Zusammenfassung 1. Respirometrische Messungen der spezifisch-dynamischen Wirkung (SDW) bei körnerfressenden Singvögeln zeigen, daß die SDW mit sinkenden Umgebungstemperaturen relativ kleiner wird. 2. Der Existenzstoffwechsel körnerfressender Singvögel weist nahrungsspezifische Unterschiede auf. Diese Unterschiede sind durch den unterschiedlichen SDW-Effekt verschiedener Nährstoffzusammensetzungen verursacht und sind von der Umgebungstemperatur abhängig: Sinken die Umgebungstemperaturen, werden die Unterschiede relativ kleiner. Diese Ergebnisse weisen darauf hin, daß körnerfressende Singvögel in der Lage sind, mit der SDW die Thermoregulation zu unterstützen.

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Can the specific dynamic action (SDA) contribute to the thermoregulation of granivorous song birds?

Summary 1. Respirometric measurements of the specific dynamic action (SDA) of granivorous song birds show that the SDA decreases relatively with dropping temperatures. 2. The existence metabolic rates of granivorous song birds show diet-related differences. These differences are caused by the SDA of different food types and are depend on the ambient temperature: With dropping ambient temperature differences become relatively smaller. These results indicate that granivorous song birds are able to use the SDA in thermoregulation.

     

Pollen and seed morphology of Nordic Draba (Brassicaceae): phylogenetic and ecological implications

Pollen and seed morphology were examined in 54 diploid and allopolyploid populations representing 15 Nordic species of the taxonomically complex genus Draba. The pollen size was strongly correlated with chromosome number, but it was unreliable for inferring the exact ploidal level of individual populations. Five main pollen types were recognized based on sculpturing of the exine. Two populations of D. lactea had conspicuously different exine sculpturing, supporting a previous hypothesis based on molecular data that this hexaploid is polyphyletic and has been derived from various combinations of diploid species. The pollen morphological data are also consistent with the hypotheses that the 16-ploid D. corymbosa is an intersectional allopolyploid derived from the sections Draba and Chrysodraba , that the hexaploid D. cinerea is a progenitor of the decaploid D. arctica , and that D. crassifolia and D. adamsii represent isolated allopolyploid lineages. The seed size and weight were only weakly correlated with chromosome number, but showed a close relationship to habitat ecology. The largest seeds were observed in species typical of closed habitats, in which seedling establishment probably is limited by competition with mosses. The seed coat surface had a characteristic verrucate reticulum, but the differentiation among species was vague or absent. The seed size and colour, however, distinguish some species, e.g., in the D. alpina complex, which otherwise are morphologically very similar.     

Continuous production of L-alanine from fumarate in a two-stage membrane reactor

Summary L-alanine was produced continuously from fumaric acid by means of soluble aspartase and L-aspartate--decarboxylase. The two reaction steps were carried out in two membrane reactors in series at different pH and temperature. The retention of the soluble enzymes within the reactor vessels was achieved by means of ultrafiltration membranes.     

Megagyrolithes ardescensis N. Gen., N. SP.,Trace fossile nouvelle du Valanginien d'Ardeche (France)

A new trace fossil corresponding to a spiral burrow is described in the Upper Valanginian of the Ardèche area (France). It seems to be restricted to marine hemipelagic facies (outer shelf and upper slope).     

Réflexions critiques sur l'écologieet la systématique des Lingules actuelles et fossiles

New topics on ecology and systematics of recent and fossil Lingulids lead to an obvious revision of our knowledges on this zoological group. At first, the recent species need systematics and taxonomy on the bases of new described specific criteria (as, morphology of deltidial areas, muscle disposition); the results are briefly indicated. But, in fossil species, disorder and disparity of used characteristics are emphasized.The general conceiving on ecology of Lingulids are reviewed and discussed, especially on bathymetry and salinity; sediment and oxygenation conditions; taphocoenosis and lingulid «communities. On recent species, all these points are also studied, especially some ecological requirements (salinity, bathymetry, grain size), and mechanism of burrowing ability, burrow living positions in the sediments, as shell preservations after death and fossilization, to facilitate the paleobiotope interpretations. Recent animals are euryhalin, surviving at salinities from about 13 to 42‰; they could be considered as well adapted to waters with strong salinity fluctuations. They show preference to fine sand bottoms (lowest particle size about 40–60 μm). Their bathymetric distribution occurs between 0 and about 500 m (Lingula especially between 5–50 m; Glottidia 15–70 m). The isotherms 8–10°C seem to restrict their geographical and bathymetric distribution.Therefore, some post-palaeozoic lingulid bedsare studied or redescribed on the bases of the above discussed characteristics, and new interpretations on the environmental situation are given (Trias of Vosges Mountains; Oligocene from Japan; Eocene of London Basin). More caution must be used in study of fossil Lingulids that are not especially animals living in infralittoral bottoms with low salinity and deficient oxygenation, as generally accepted.     

Étude des variations du nombre et de la répartition des muscles longitudinaux chez Phoronis psammophila Cori

In 21 samples, staggered over 18 months, 1725 composite muscle formulae have been established for Phoronis psammophila Cori. The study of variations of the number and distribution of longitudinal muscle bundles demonstrates the increase of the muscle number (3 or 4) with the age of the animals. This increase is displayed with difficulty because of the interactions of many phenomena, especially reproduction and so statistical tests have not indicated significance. The general and especially mean formulae of different samples do not indicate the increase of the number of muscle bundles with time, as proposed by Emig.