TRAILR1 (rs20576) and GRIA3 (rs12557782) are not associated with interferon-β response in multiple sclerosis patients

Molecular Biology Reports - Multiple sclerosis (MS) is an autoimmune-type inflammatory disorder in human central nervous system. Recombinant interferon beta (IFN-β) decreases the number of...     

Interaction of diazinon with DNA and the protective role of selenium in DNA damage

The interaction of native calf thymus DNA with Diazinon, an organophophorus insecticide, in HEPES buffer at neutral pH, was monitored by UV absorption spectrophotometry, circular dichroism (CD), electrochemical technique, and fluorescence spectroscopy. UV spectra showed hyperchromicity and blue shift with the increase of Diazinon concentration. Fluorescence spectroscopy results indicated that the probable quenching mechanism of DNA-ethidium bromide (EB) fluorescence by Diazinon is a dynamic quenching procedure, because the Stern-Volmer quenching constant (K(SV)) increased with the temperature rising. Unchanging of the CD signal around 280 nm with increasing ratio of Diazinon to DNA is an important evidence for non-intercalative-binding mode of Diazinon with DNA. Stoichiometry measurement of the DNA-nDiazinon indicated that a stable 1:2 complex of DNA-Diazinon was formed under the selected conditions. The electrochemical study of the Diazinon-DNA interaction was carried out by incubation of DNA with Diazinon in the presence of varying amounts of selenium (Se). This technique revealed that Se is able to diminish the DNA damage effect of Diazinon.     

Staphylococcus aureus AgrA binding to the RNAIII-agr regulatory region

The control of virulence gene expression in the human pathogen Staphylococcus aureus is under the partial control of the two-component quorum-sensing system encoded by genes of the agr locus. The product of the agrA gene has been shown by amino acid sequence similarity to be the putative response regulator; however, binding of AgrA to promoters under its control has not yet been demonstrated. In this study, we isolated and purified soluble AgrA by expression under osmotic shock conditions and ion-exchange chromatography. Purified AgrA showed high-affinity binding to the RNAIII-agr intergenic region by electrophoretic mobility shift assays. Binding was localized by DNase I protection assays to a pair of direct repeats in the P2 and P3 promoter regions of the agr locus. We found that this binding was enhanced by the addition of the small phosphoryl donor, acetyl phosphate. The difference in binding affinity between these two promoters was found to result from a 2-bp difference between the downstream direct repeats of the P2 and P3 sites. Mutation of these base pairs in the P3 site to match those found in the P2 site increased the affinity of AgrA for the P3 site relative to that for the P2 site. These results are consistent with the function of AgrA as a response regulator with recognition sites in the promoter regions of RNAIII and the agr locus.     

Biomimetic synthesis and characterization of cobalt nanoparticles using apoferritin, and investigation of direct electron transfer of Co(NPs)–ferritin at modified glassy carbon electrode to design a novel nanobiosensor

Oxyhydroxy cobalt CoO(OH) nanoparticles (Co-NPs) were prepared in horse spleen apoferritin (HsAFr) cavity. Transmission electron microscopy revealed the particle size was 5.5-6 nm. Mineralization effect on HsAFr was investigated by fluorescence and far-UV circular dichroism (far-UV CD) spectroscopies. The far-UV CD experiments indicated an increase in the α-helical content after mineralization. Intrinsic fluorescence data showed that mineralization acts as a quencher of HsAFr. For the first time, direct electron transfer between Co(NPs)-HsAFr and a glassy carbon electrode in the thin film of dihexadecylphosphate (DHP) was investigated by cyclic voltammetry (CV) to design a biosensor. The anionic surfactant DHP was used to achieve direct electron-transfer between Co(NPs)-HsAFr molecules and the GC electrode surface. CV result showed clearly a pair of well-defined and quasi-reversible redox peaks arise from Co(NPs)-HsAFr embedded in DHP film. This novel biosensor can be used in medical and industrial fields to detect different analytes.     

Assessment of gene set analysis methods based on microarray data

Gene set analysis (GSA) incorporates biological information into statistical knowledge to identify gene sets differently expressed between two or more phenotypes. It allows us to gain an insight into the functional working mechanism of cells beyond the detection of differently expressed gene sets. In order to evaluate the competence of GSA approaches, three self-contained GSA approaches with different statistical methods were chosen; Category, Globaltest and Hotelling's T² together with their assayed power to identify the differences expressed via simulation and real microarray data. The Category does not take care of the correlation structure, while the other two deal with correlations.     

Electrical aspects of division control inSaccharomyces

Readily discernable changes in electrical character take place during the division cycle of the yeast,Saccharomyces cerevisiae. By using the technique of cellular spin resonance, the electrical polarizability of individual cells can be seen to change with the life cycle, as determined by cell morphology. The polarizability changes indicate that during the advance through the life cycle, the ionic double layers associated with the outer cell wall gradually tighten.