Ecological and biogeographical effects of forest disturbance on tropical butterflies of Sumba, Indonesia

ABSTRACT. Butterfly assemblages within lowland monsoon forest were compared at four sites on Sumba, Indonesia that differed in terms of protection and exhibited associated differences in levels of human disturbance. A numerical method employing principal components analysis was devised for describing forest structure at each site. The first principal component (PRIN1) grouped attributes tending towards dense forest with closely-spaced trees, a closed canopy and a poorly developed field layer, with trees that tended to be large with the point of inversion in the upper half of the trunk. The highest values for PRIN1 were recorded within protected forest, and PRIN1 values were considered to be a useful index of forest disturbance at each site. Species diversity of butterflies was highest in unprotected secondary forest, but was not affected by lower levels of disturbance. Those species occurring at highest density in secondary forest generally had wide geographical distributions, whereas those species occurring at highest density in undisturbed primary forest had restricted ranges of distribution, in most cases with a separate subspecies on Sumba. Overall, an index of biogeographical distinctiveness decreased with increasing disturbance, and this supports the hypothesis that the most characteristic species of undisturbed climax forest have the smallest geographical ranges of distribution. Species abundance data for butterflies fitted a log-normal distribution at all but the most disturbed site. These results indicate that the pattern of proportional abundance of tropical butterfly species may be used as an ‘instantaneous’ indicator of forest disturbance, and that changes in the structure of tropical forests in S.E. Asia resulting from human disturbance, even within partially-protected forest, may result in the presence of butterfly assemblages of higher species diversity but of lower biogeographical distinctiveness, and therefore of lower value in terms of the conservation of global biodiversity.     

A Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex: Evidence for CESA Trimers

A cellulose synthesis complex with a “rosette” shape is responsible for synthesis of cellulose chains and their assembly into microfibrils within the cell walls of land plants and their charophyte algal progenitors. The number of cellulose synthase proteins in this large multisubunit transmembrane protein complex and the number of cellulose chains in a microfibril have been debated for many years. This work reports a low resolution structure of the catalytic domain of CESA1 from Arabidopsis (Arabidopsis thaliana; AtCESA1CatD) determined by small-angle scattering techniques and provides the first experimental evidence for the self-assembly of CESA into a stable trimer in solution. The catalytic domain was overexpressed in Escherichia coli, and using a two-step procedure, it was possible to isolate monomeric and trimeric forms of AtCESA1CatD. The conformation of monomeric and trimeric AtCESA1CatD proteins were studied using small-angle neutron scattering and small-angle x-ray scattering. A series of AtCESA1CatD trimer computational models were compared with the small-angle x-ray scattering trimer profile to explore the possible arrangement of the monomers in the trimers. Several candidate trimers were identified with monomers oriented such that the newly synthesized cellulose chains project toward the cell membrane. In these models, the class-specific region is found at the periphery of the complex, and the plant-conserved region forms the base of the trimer. This study strongly supports the “hexamer of trimers” model for the rosette cellulose synthesis complex that synthesizes an 18-chain cellulose microfibril as its fundamental product.Cellulose, the most abundant biopolymer on Earth, is composed of linear chains of β-1,4 linked d-Glc monomers with repeating structural units of the disaccharide cellobiose. Numerous cellulose polymers cocrystallize to form microfibrils, which provide mechanical strength and rigidity to plants. Its natural abundance makes it an attractive target for many industrial applications, including paper and pulping, construction, and textile manufacture. More recently, cellulose has been used for production of biofuels, such as ethanol (Ragauskas et al., 2006; Langan et al., 2014), and in the form of nanocellulose as a component in advanced composite materials (Reddy et al., 2013; Habibi, 2014). Cellulose microfibrils are synthesized by a large membrane-bound protein complex. In the land plants and charophycean algae, the cellulose synthesis complex (CSC) has a “rosette” shape (Mueller et al., 1976; Mueller and Brown, 1980b; Kimura et al., 1999), and the entire CSC has reported diameters between 24 to 30 nm (Lerouxel et al., 2006). This structural information was revealed by freeze-fracture transmission electron microscopy, showing six lobes in a hexagonal arrangement at the point where the transmembrane helices of multiple cellulose synthase proteins (CESAs) cross the plasma membrane. Recently KORRIGAN, a protein with cellulase activity, has also been implicated as an integral component of the CSC (Vain et al., 2014).Vascular plants produce several different CESA isoforms. For example, Arabidopsis (Arabidopsis thaliana) has 10 different isoforms with 64% to 98% sequence identity (Holland et al., 2000; Richmond, 2000; McFarlane et al., 2014). The different CESA isoforms play specific roles in cellulose synthesis during plant development. In Arabidopsis, CESA1, CESA3, and CESA6 are required for primary cell wall synthesis, while CESA4, CESA7, and CESA8 are required for secondary cell wall synthesis (Gardiner et al., 2003; Taylor et al., 2003; Persson et al., 2007). CESA2, CESA5, and CESA9 play roles in tissue-specific processes and are partially redundant with CESA6, whereas CESA10 is closely related to AtCESA1 but evidently has a minor role in plant development (Somerville, 2006). The absolute number of CESA proteins present in a CSC remains a subject of much speculation, largely because the stoichiometry of the cellulose microfibril remains unresolved (Cosgrove, 2014). The traditional representation of the microfibril has 36 cellulose chains, and based on this, one would expect that each lobe of the rosette CSC contains six CESA proteins responsible for the synthesis of six glucan chains for a total of 36 CESA proteins per rosette CSC (Herth, 1983; Perrin, 2001; Doblin et al., 2002). However, recent studies using different analytical techniques combined with computation report 18 to 24 cellulose chains per microfibril (Fernandes et al., 2011; Thomas et al., 2013; Oehme et al., 2015). A study of cellulose from mung bean (Vigna radiata) primary cell walls, using x-ray diffraction, solid-state NMR, and computational analysis, supports an 18-chain model for a cellulose microfibril (Newman et al., 2013). This implies that the CSC is composed of fewer than 36 CESA proteins or that not all of the proteins in a CSC are simultaneously active. Further, it has been recently reported that the stoichiometry of CESAs 1, 3, and 6 and CESAs 4, 7, and 8 in the primary and secondary cell walls, respectively, is 1:1:1 (Gonneau et al., 2014; Hill et al., 2014). Together, these reports suggest a rosette CSC composed of 18 CESA proteins with three CESAs per lobe as the most likely composition of a rosette CSC to account for an 18-chain cellulose microfibril (Newman et al., 2013; Gonneau et al., 2014; Hill et al., 2014). In addition, it should also be noted that 24 CESA proteins in a rosette CSC with four proteins per lobe is incompatible with a 1:1:1 CESA stoichiometry.Numerous efforts to isolate active CESA proteins directly from plants or by recombinant expression have not been successful, preventing a detailed structural analysis of CESA proteins or the mechanism of plant cellulose synthesis. In contrast, the recently reported crystal structure of cellulose synthase from Rhodoobacter sphaeroides (Morgan et al., 2013) clearly showed that only a single cellulose synthase polypeptide is required for glucan polymerization and also identified the conserved sequence motifs responsible for catalysis. In addition, based on the presence of an 18-residue glucan chain in the protein tunnel, a mechanism for cellulose synthesis and translocation across a cytoplasmic membrane was proposed that also addressed how the alternate d-Glc molecules are inverted during polymer synthesis (Morgan et al., 2013; Omadjela et al., 2013). However, this structure cannot provide insight into the formation of microfibrils from the cellulose chains synthesized by single polypeptides of CESA.The CESA proteins of land plants and their charophycean algal relatives are multidomain single polypeptide chains of approximately 1000 amino acids. They are predicted to have eight transmembrane helices and to have their N- and C-terminal regions facing the cytoplasm (Pear et al., 1996). Although they share sequence similarity with the bacterial counterpart, they also have unique structural features not found in the bacterial enzymes. The N-terminal domain contains a Zn-binding site that may play a role in oligomerization of CESA proteins (Kurek et al., 2002). The putative cytosolic domain, which is flanked by a two-helix N-terminal transmembrane domain and a six-helix C-terminal transmembrane domain (McFarlane et al., 2014; Slabaugh et al., 2014), has D, D, D, QxxRW motifs that are conserved substrate binding and catalytic residues in the glycosyltransferase-2 superfamily (Nagahashi et al., 1995; Pear et al., 1996; Saxena and Brown, 1997; Yoshida et al., 2000). This domain also has a plant-conserved region (P-CR) and a class-specific region (CSR) that are only found in CESAs that form rosette CSCs. Although the roles of these regions are unknown, they are proposed to be involved in regulatory functions, such as interactions with other proteins and oligomerization to form the rosette shape. In the Arabidopsis CESAs, the sequence identity within the P-CR regions is greater than 80%, while in CSR regions, it is only about 40%. A recent computational model of the cytosolic domain of cotton (Gossypium hirsutum) CESA1 provides the first detailed structural model of the catalytic domain of CESA (Sethaphong et al., 2013). This model structure aligns well with the crystal structure of the bacterial cellulose synthase, indicating that a common mechanism exists for cellulose synthesis in bacteria and plants and that CESAs within rosette CSCs contain a single active synthetic site. In addition, this model made it possible to test possible configurations for the assembly of CESA monomers into a functional rosette CSC (Newman et al., 2013; Sethaphong et al., 2013).Our understanding of the mechanism of cellulose biosynthesis in plants at the molecular level is hampered by the lack of an atomic level CESA model. To gain deeper insight into the structure and role of the catalytic domain of CESA in rosette formation, we carried out a structural characterization of the cytosolic domain of Arabidopsis CESA1, a protein that is essential for cellulose synthesis in the primary cell wall (Arioli et al., 1998). The recombinant protein was purified from Escherichia coli in a two-step process that allowed us to obtain low-resolution structural information about the monomeric and trimeric forms of the recombinant protein using small-angle scattering (SAS) techniques. This study provides the first experimental evidence to support the self-assembly of CESAs into a stable trimer complex, revealing the possible role of the catalytic domain in the formation of the rosette CSC. Comparison of the size of the catalytic domain trimer with dimensions of rosette CSCs obtained from TEM studies strongly supports the “hexamer of trimers” model for rosette CSCs. Computational analysis of the scattering data suggested configurations for how the monomers, including the plant-specific P-CR and CSR domains, may be arranged in the trimeric lobes of the rosette CSC. Knowledge of how CESA proteins assemble in the CSC will enable approaches for rational genetic manipulation of plant cell wall synthesis, which offers enormous opportunities to improve feedstocks for the production of sustainable fuels and chemicals.     

Disposable Soma Theory and the Evolution of Maternal Effects on Ageing

Maternal effects are ubiquitous in nature and affect a wide range of offspring phenotypes. Recent research suggests that maternal effects also contribute to ageing, but the theoretical basis for these observations is poorly understood. Here we develop a simple model to derive expectations for (i) if maternal effects on ageing evolve; (ii) the strength of maternal effects on ageing relative to direct environmental effects; and (iii) the predicted relationships between environmental quality, maternal age and offspring lifespan. Our model is based on the disposable soma theory of ageing, and the key assumption is thus that mothers trade off their own somatic maintenance against investment in offspring. This trade-off affects the biological age of offspring at birth in terms of accumulated damage, as indicated by biomarkers such as oxidative stress or telomere length. We find that the optimal allocation between investment in maternal somatic investment and investment in offspring results in old mothers and mothers with low resource availability producing offspring with reduced life span. Furthermore, the effects are interactive, such that the strongest maternal age effects on offspring lifespan are found under low resource availability. These findings are broadly consistent with results from laboratory studies investigating the onset and rate of ageing and field studies examining maternal effects on ageing in the wild.     

Oligodendroglial Differentiation in Glial Primary Cultures: Requirement for Mevalonate

The oligodendroglial enzyme, 2',3'-cyclic nucleotide 3'-phosphohydrolase (CNP), is a valuable marker for expression of oligodendroglial differentiation in glial primary cultures, and the inducibility of this enzyme by dibutyryl-3',5'-cyclic AMP (dBcAMP) appears to be limited to immature or developing oligodendroglia. To investigate the relationship between the induction of CNP and the sterol biosynthetic pathway, primary cultures of glia dissociated from the brains of newborn rats were maintained in 10% fetal calf serum (FCS) and exposed to 1 mM dBcAMP on day 7 in culture. Cultures so treated for either 48 h or 72 h demonstrated a three- to fourfold induction of CNP specific activity. The magnitude of this induction was not affected when the cholesterol content of the culture medium was reduced by greater than 95% by placing the cultures in 10% lipoprotein-poor serum rather than 10% FCS during the exposure to dBcAMP. Mevinolin (10 microM), a specific inhibitor of 3-hydroxy-3-methylglutaryl coenzyme A reductase, the rate-limiting enzyme of the sterol biosynthetic pathway, completely inhibited the induction of CNP by dBcAMP, while not affecting either the accumulation of cellular protein per flask or rate of protein synthesis. Simultaneous addition of mevalonate (20 mM) prevented the inhibition of the induction of CNP by mevinolin. However, simultaneous addition of low-density lipoprotein sufficient to increase the cholesterol content of the medium 80-fold failed to correct mevinolin's inhibition of the induction of CNP.(ABSTRACT TRUNCATED AT 250 WORDS)     

Coordinate regulation of adenylate cyclase, protein kinase, and specific enzyme synthesis by cholera toxin in hormonally unresponsive hepatoma cells

Since none of the hormones which activate adenylate cyclase in other tissues have been found to activate adenylate cyclase or to induce tyrosine aminotransferase in cultured Reuber hepatoma cells (H35), despite the stimulatory effects of cyclic AMP derivatives on the latter enzyme, we tested the ability of cholera toxin to influence these processes. At low concentrations cholera toxin was found to mimic the ability of cyclic AMP derivatives to selectively stimulate the synthesis of the aminotransferase. Adenylate cyclase and protein kinase activity were also enhanced, but only after a lag period as in other systems. Specific phosphorylation of endogenous H₁ histone was also shown to be increased by cholera toxin treatment. The increase in tyrosine aminotransferase activity is due to an increase in de novo synthesis as shown by radiolabeling experiments utilizing specific immunoprecipitation. The activity of another soluble enzyme induced by dibutyryl cyclic AMP, PEP carboxykinase, was also stimulated by exposure of H35 cells to cholera toxin. Combinations of cholera toxin and dexamethasone led to greater than additive increases in the activity of both the aminotransferase and carboxykinase. Close coupling of cyclic AMP production with protein kinase activation and enzyme induction was suggested by the observation that the ED₅₀ values for the stimulation of adenylate cyclase, cyclic AMP production, protein kinase, and tyrosine aminotransferase activities were found to be the same (5–7 ng/ml) within experimental error. The results indicate that the adenylate cyclase system in H35 cells is functionally responsive and they support the suggestion that activation of protein kinase is functionally linked to induction of specific enzymes.     

Studies on the mechanism of activation of mitotic histone H1 kinase

A chromatin-associated histone H1 kinase has been detected in synchronized Novikoff hepatoma cells. Enzyme specific activity increased 4 to 6-fold from late G-2 to mid-metaphase, then decayed exponentially ($\text{T}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}$, 28.5 min) to the interphase level. Extracts of the mitotic kinase retained the ability to decay $\text{in}\text{vitro}$ at 37°C but not at 0°C ($\text{T}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}$, 24 min), under conditions in which interphase activity was stable. Sedimentation rates in sucrose density gradients of interphase and mitotic enzymes (before and after decay) were identical. Purification did not alter the rate of enzyme decay. However, high ionic strength prevented decay of crude but not purified preparations of mitotic enzyme. The results are discussed in terms of an allosteric mechanism for reversible activation of enzyme activity.     

Big Baby,Little Mother: Tsetse Flies Are Exceptions to the Juvenile Small Size Principle

While across the animal kingdom offspring are born smaller than their parents, notable exceptions exist. Several dipteran species belonging to the Hippoboscoidea superfamily can produce offspring larger than themselves. In this essay, the blood-feeding tsetse is focused on. It is suggested that the extreme reproductive strategy of this fly is enabled by feeding solely on highly nutritious blood, and producing larval offspring that are soft and malleable. This immense reproductive expenditure may have evolved to avoid competition with other biting flies. Tsetse also transmit blood-borne parasites that cause the fatal diseases called African trypanosomiases. It is discussed how tsetse life history and reproductive strategy profoundly influence the type of vector control interventions used to reduce fly populations. In closing, it is argued that the unusual life history of tsetse warrants their preservation in the areas where human and animal health is not threatened.     

Tumour Necrosis Factor Alpha,Interferon Gamma and Substance P Are Novel Modulators of Extrapituitary Prolactin Expression in Human Skin

Human scalp skin and hair follicles (HFs) are extra-pituitary sources of prolactin (PRL). However, the intracutaneous regulation of PRL remains poorly understood. Therefore we investigated whether well-recognized regulators of pituitary PRL expression, which also impact on human skin physiology and pathology, regulate expression of PRL and its receptor (PRLR) in situ. This was studied in serum-free organ cultures of microdissected human scalp HFs and skin, i.e. excluding pituitary, neural and vascular inputs. Prolactin expression was confirmed at the gene and protein level in human truncal skin, where its expression significantly increased (p = 0.049) during organ culture. There was, however, no evidence of PRL secretion into the culture medium as measured by ELISA. PRL immunoreactivity (IR) in female human epidermis was decreased by substance P (p = 0.009), while neither the classical pituitary PRL inhibitor, dopamine, nor corticotropin-releasing hormone significantly modulated PRL IR in HFs or skin respectively. Interferon (IFN) γ increased PRL IR in the epithelium of human HFs (p = 0.044) while tumour necrosis factor (TNF) α decreased both PRL and PRLR IR. This study identifies substance P, TNFα and IFNγ as novel modulators of PRL and PRLR expression in human skin, and suggests that intracutaneous PRL expression is not under dopaminergic control. Given the importance of PRL in human hair growth regulation and its possible role in the pathogenesis of several common skin diseases, targeting intracutaneous PRL production via these newly identified regulatory pathways may point towards novel therapeutic options for inflammatory dermatoses.     

Hormonal Contraception and the Risk of HIV Acquisition: An Individual Participant Data Meta-analysis

BackgroundObservational studies of a putative association between hormonal contraception (HC) and HIV acquisition have produced conflicting results. We conducted an individual participant data (IPD) meta-analysis of studies from sub-Saharan Africa to compare the incidence of HIV infection in women using combined oral contraceptives (COCs) or the injectable progestins depot-medroxyprogesterone acetate (DMPA) or norethisterone enanthate (NET-EN) with women not using HC.ConclusionsThis IPD meta-analysis found no evidence that COC or NET-EN use increases women’s risk of HIV but adds to the evidence that DMPA may increase HIV risk, underscoring the need for additional safe and effective contraceptive options for women at high HIV risk. A randomized controlled trial would provide more definitive evidence about the effects of hormonal contraception, particularly DMPA, on HIV risk.