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161.
Marina Gobbo Elisabetta Merli Barbara Biondi Simona Oancea Antonio Toffoletti Fernando Formaggio Claudio Toniolo 《Journal of peptide science》2012,18(1):37-44
A set of analogues of the 14‐residue peptaibol tylopeptin B, containing the stable free‐radical 4‐amino‐1‐oxyl‐2,2,6,6,‐tetramethylpiperidine‐4‐carboxylic acid (TOAC) at one or two selected positions, was synthesized by the solid‐phase methodology. A solution conformational analysis performed by FTIR absorption and CD suggests that, in membrane‐mimicking solvents, the labeled tylopeptin B analogues preserve the helical propensity of the parent peptide, with a preference for the α‐helix or the 310‐helix type depending upon the nature of the solvent. In aqueous environment, the spin‐labeled analogues present a higher content of helical conformation as a consequence of the strong helix promoter effect of the conformationally constrained TOAC residue. We observed a progressive increase of the quenching effect of the nitroxyl radical on the fluorescence of the N‐terminal tryptophan as TOAC replaces the Aib residue at positions 13, 8, and 4, respectively. A membrane permeabilization assay performed on two selected analogues, TOAC8‐ and TOAC13‐tylopeptin B, showed that the labeled peptides exhibit membrane‐modifying properties comparable with those of the natural peptaibiotic. We conclude that our TOAC paramagnetic analogues of tylopeptin B are good models for a detailed ESR investigation of the mechanism of membrane permeabilization induced by medium‐length peptaibiotics. Copyright © 2011 European Peptide Society and John Wiley & Sons, Ltd. 相似文献
162.
Samuel Morisse Laure Michelet Mariette Bedhomme Christophe H. Marchand Matteo Calvaresi Paolo Trost Simona Fermani Mirko Zaffagnini Stéphane D. Lemaire 《The Journal of biological chemistry》2014,289(43):30012-30024
In photosynthetic organisms, thioredoxin-dependent redox regulation is a well established mechanism involved in the control of a large number of cellular processes, including the Calvin-Benson cycle. Indeed, 4 of 11 enzymes of this cycle are activated in the light through dithiol/disulfide interchanges controlled by chloroplastic thioredoxin. Recently, several proteomics-based approaches suggested that not only four but all enzymes of the Calvin-Benson cycle may withstand redox regulation. Here, we characterized the redox features of the Calvin-Benson enzyme phosphoglycerate kinase (PGK1) from the eukaryotic green alga Chlamydomonas reinhardtii, and we show that C. reinhardtii PGK1 (CrPGK1) activity is inhibited by the formation of a single regulatory disulfide bond with a low midpoint redox potential (−335 mV at pH 7.9). CrPGK1 oxidation was found to affect the turnover number without altering the affinity for substrates, whereas the enzyme activation appeared to be specifically controlled by f-type thioredoxin. Using a combination of site-directed mutagenesis, thiol titration, mass spectrometry analyses, and three-dimensional modeling, the regulatory disulfide bond was shown to involve the not strictly conserved Cys227 and Cys361. Based on molecular mechanics calculation, the formation of the disulfide is proposed to impose structural constraints in the C-terminal domain of the enzyme that may lower its catalytic efficiency. It is therefore concluded that CrPGK1 might constitute an additional light-modulated Calvin-Benson cycle enzyme with a low activity in the dark and a TRX-dependent activation in the light. These results are also discussed from an evolutionary point of view. 相似文献
163.
DNA-based methods for the detection and the identification of phytoplasmas in insect vector extracts
DNA extraction and storage methods have been evaluated with laboratory-reared leafhoppers and/or field-collected leafhoppers
and psyllids. Detection of four different phytopathogenic phytoplasmas, belonging to three taxonomic groups, has been achieved
by several direct or nested polymerase chain reaction (PCR) methods with such DNA extracts. Reactions differed in both the
16/23S ribosomal primer pairs used and the specific assay and cycling conditions. Merits and possible hindrances of the various
primer pairs, in relation to insect DNA extracts, are discussed. However, identification of the phytoplasma(s) necessarily
relied on comparison of the polymorphism in length of the amplified DNA fragments obtained by restriction with appropriate
endonucleases. Endonuclease digestion is crucial for determining the identity (subgroup affiliation) of phytoplasmas of the
same groups that can be carried by an individual vector. 相似文献
164.
Marcel R. Eugster Laurent S. Morax Vanessa J. Hüls Simona G. Huwiler Alexandre Leclercq Marc Lecuit Martin J. Loessner 《Molecular microbiology》2015,97(1):33-46
Listeria monocytogenes is a bacterial pathogen classified into distinct serovars (SVs) based on somatic and flagellar antigens. To correlate phenotype with genetic variation, we analyzed the wall teichoic acid (WTA) glycosylation genes of SV 1/2, 3 and 7 strains, which differ in decoration of the ribitol‐phosphate backbone with N‐acetylglucosamine (GlcNAc) and/or rhamnose. Inactivation of lmo1080 or the dTDP‐l ‐rhamnose biosynthesis genes rmlACBD (lmo1081–1084) resulted in loss of rhamnose, whereas disruption of lmo1079 led to GlcNAc deficiency. We found that all SV 3 and 7 strains actually originate from a SV 1/2 background, as a result of small mutations in WTA rhamnosylation and/or GlcNAcylation genes. Genetic complementation of different SV 3 and 7 isolates using intact alleles fully restored a characteristic SV 1/2 WTA carbohydrate pattern, including antisera reactions and phage adsorption. Intriguingly, phage‐resistant L. monocytogenes EGDe (SV 1/2a) isolates featured the same glycosylation gene mutations and were serotyped as SV 3 or 7 respectively. Again, genetic complementation restored both carbohydrate antigens and phage susceptibility. Taken together, our data demonstrate that L. monocytogenes SV 3 and 7 originate from point mutations in glycosylation genes, and we show that phage predation represents a major driving force for serovar diversification and evolution of L. monocytogenes. 相似文献
165.
Holtan HE Bandong S Marion CM Adam L Tiwari S Shen Y Maloof JN Maszle DR Ohto MA Preuss S Meister R Petracek M Repetti PP Reuber TL Ratcliffe OJ Khanna R 《Plant physiology》2011,156(4):2109-2123
A B-box zinc finger protein, B-BOX32 (BBX32), was identified as playing a role in determining hypocotyl length during a large-scale functional genomics study in Arabidopsis (Arabidopsis thaliana). Further analysis revealed that seedlings overexpressing BBX32 display elongated hypocotyls in red, far-red, and blue light, along with reduced cotyledon expansion in red light. Through comparative analysis of mutant and overexpression line phenotypes, including global expression profiling and growth curve studies, we demonstrate that BBX32 acts antagonistically to ELONGATED HYPOCOTYL5 (HY5). We further show that BBX32 interacts with SALT TOLERANCE HOMOLOG2/BBX21, another B-box protein previously shown to interact with HY5. Based on these data, we propose that BBX32 functions downstream of multiple photoreceptors as a modulator of light responses. As such, BBX32 potentially has a native role in mediating gene repression to maintain dark adaptation. 相似文献
166.
167.
Ambra Quacchia Chiara Ferracini Simona Bonelli Emilio Balletto Alberto Alma 《Biodiversity and Conservation》2008,17(6):1429-1437
Cacyreus marshalli Butler is an invasive species in many parts of Europe and Mediterranean area. In Europe, its larvae normally feed on pelargoniums.
We investigated its potential to spread to native Geranium spp. and evaluated the conservation risks that such a shift would pose for both native geraniums and cohabitant butterflies.
The host plant preferences of the Geranium Bronze were investigated under controlled conditions. Studies included both no-choice
and multi-choice tests, respectively using 9 and 6 Italian native Geranium spp. Host plant preferences were evaluated by counting the number of eggs laid on individual plants and following butterfly
development until adult emergence. Under no-choice conditions, at least one egg was recorded on each tested plant, except
for G. phaeum L. All the plants on which oviposition occurred were fully suitable for larval development. The butterfly, however, clearly
preferred three species, i.e. G. pratense L., G. sanguineum L. and G. sylvaticum L. for oviposition. In multi-choice trials, females laid at least one egg on all the tested plants, with a preference for
G. pratense and G. sylvaticum. In presence of Pelargonium spp. plants, however, no oviposition was observed on any Geranium spp. We assessed offspring fitness measuring their wingspan. No statistical differences were detected in the wingspan between
adults emerged from Geranium and Pelargonium. Cacyreus marshalli represents a potential threat for both native geraniums and for Geranium-consuming lycaenids, such as Aricia nicias Meigen and Eumedonia eumedon Esper. 相似文献
168.
169.
Long Tree-Ring Chronologies Provide Evidence of Recent Tree Growth Decrease in a Central African Tropical Forest 总被引:1,自引:0,他引:1
Giovanna Battipaglia Enrica Zalloni Simona Castaldi Fabio Marzaioli Roberto Cazzolla- Gatti Bruno Lasserre Roberto Tognetti Marco Marchetti Riccardo Valentini 《PloS one》2015,10(3)
It is still unclear whether the exponential rise of atmospheric CO2 concentration has produced a fertilization effect on tropical forests, thus incrementing their growth rate, in the last two centuries. As many factors affect tree growth patterns, short -term studies might be influenced by the confounding effect of several interacting environmental variables on plant growth. Long-term analyses of tree growth can elucidate long-term trends of plant growth response to dominant drivers. The study of annual rings, applied to long tree-ring chronologies in tropical forest trees enables such analysis. Long-term tree-ring chronologies of three widespread African species were measured in Central Africa to analyze the growth of trees over the last two centuries. Growth trends were correlated to changes in global atmospheric CO2 concentration and local variations in the main climatic drivers, temperature and rainfall. Our results provided no evidence for a fertilization effect of CO2 on tree growth. On the contrary, an overall growth decline was observed for all three species in the last century, which appears to be significantly correlated to the increase in local temperature. These findings provide additional support to the global observations of a slowing down of C sequestration in the trunks of forest trees in recent decades. Data indicate that the CO2 increase alone has not been sufficient to obtain a tree growth increase in tropical trees. The effect of other changing environmental factors, like temperature, may have overridden the fertilization effect of CO2. 相似文献
170.
Simona Nardozza Helen L. Boldingh M. Peggy Kashuba Regina Feil Dan Jones Amali H. Thrimawithana Hilary S. Ireland Marine Philippe Mark W. Wohlers Tony K. McGhie Mirco Montefiori John E. Lunn Andrew C. Allan Annette C. Richardson 《Plant, cell & environment》2020,43(4):819-835
Kiwifruit (Actinidia spp.) is a recently domesticated fruit crop with several novel-coloured cultivars being developed. Achieving uniform fruit flesh pigmentation in red genotypes is challenging. To investigate the cause of colour variation between fruits, we focused on a red-fleshed Actinidia chinensis var. chinensis genotype. It was hypothesized that carbohydrate supply could be responsible for this variation. Early in fruit development, we imposed high or low (carbon starvation) carbohydrate supplies treatments; carbohydrate import or redistribution was controlled by applying a girdle at the shoot base. Carbon starvation affected fruit development as well as anthocyanin and carbohydrate metabolite concentrations, including the signalling molecule trehalose 6-phosphate. RNA-Seq analysis showed down-regulation of both gene-encoding enzymes in the anthocyanin and carbohydrate biosynthetic pathways. The catalytic trehalose 6-phosphate synthase gene TPS1.1a was down-regulated, whereas putative regulatory TPS7 and TPS11 were strongly up-regulated. Unexpectedly, under carbon starvation MYB10, the anthocyanin pathway regulatory activator was slightly up-regulated, whereas MYB27 was also up-regulated and acts as a repressor. To link these two metabolic pathways, we propose a model where trehalose 6-phosphate and the active repressor MYB27 are involved in sensing the carbon starvation status. This signals the plant to save resources and reduce the production of anthocyanin in fruits. 相似文献