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31.
Simin D Maleknia Jason W H Wong Kevin M Downard 《Photochemical & photobiological sciences》2004,3(8):741-748
The reaction of hydroxyl and other oxygen-based radicals with the side chains of proteins on millisecond timescales has been used to probe the structure of proteins, their dynamics in solution and interactions with other macromolecules. Radicals are generated in high flux within microseconds from synchrotron radiation and discharge sources and react with proteins on timescales that are less than those often attributed to structural reorganisation and folding. The oxygen-based radicals generated in aqueous solution react with proteins to effect limited oxidation at specific amino acids throughout the sequence of the protein. The extent of oxidation at these residue markers is highly influenced by the accessibility of the reaction site to the bulk solvent. The extent of oxidation allows protection levels to be measured based on the degree to which a reaction occurs. A map of a protein's three-dimensional structure is subsequently assembled as in a footprinting experiment. Protein solutions that contain various concentrations of substrates that either promote or disrupt structural transitions can be investigated to facilitate site-specific equilibrium and time-resolved studies of protein folding. The radical-based strategies can also be employed in the study of protein-protein interactions to provide a new avenue for investigating protein complexes and assemblies with high structural resolution. The urea-induced unfolding of apomyoglobin, and the binding domains within the ribonuclease S and calmodulin-melittin protein-peptide complexes are presented to illustrate the approach. 相似文献
32.
Age-associated increase in PGE2 synthesis and COX activity in murine macrophages is reversed by vitamin E 总被引:8,自引:0,他引:8
Wu Dayong; Mura Casilda; Beharka Alison A.; Han Sung Nim; Paulson K. Eric; Hwang Daniel; Meydani Simin Nikbin 《American journal of physiology. Cell physiology》1998,275(3):C661
We previouslyshowed that increased macrophage andPGE2 production with age is due toenhanced cyclooxygenase (COX) activity and COX-2 expression. This studydetermined the effect of vitamin E supplementation on macrophagePGE2 synthesis in young and old mice and its underlying mechanism. Mice were fed 30 or 500 parts permillion vitamin E for 30 days. Lipopolysaccharide (LPS)-stimulated macrophages from old mice produced significantly morePGE2 than those from young mice.Vitamin E supplementation reversed the increasedPGE2 production in old mice buthad no effect on macrophage PGE2production in young mice. In both LPS-stimulated and unstimulated macrophages, COX activity was significantly higher in old than in youngmice at all intervals. Vitamin E supplementation completely reversedthe increased COX activity in old mice to levels comparable to those ofyoung mice but had no effect on macrophage COX activity of young miceor on COX-1 and COX-2 protein or COX-2 mRNA expression in young or oldmice. Thus vitamin E reverses the age-associated increase in macrophagePGE2 production and COX activity.Vitamin E exerts its effect posttranslationally, by inhibiting COXactivity. 相似文献
33.
Jingqiang Zheng Chaohong Guan Huangxu Li Danjun Wang Yanqing Lai Simin Li Jie Li Zhian Zhang 《Liver Transplantation》2024,14(15):2303584
The primary bottleneck hindering the application of hard carbon in sodium-ion batteries (SIBs) anodes lies in its inadequate initial Coulombic efficiency (ICE). Unclear causes of capacity loss at the microscopic level restrict the improvement of hard carbon anodes. Here, two pivotal stages that influence the structure and composition of hard carbon, namely synthesis, and storage are evaluated; subsequently identifying crucial determinants contributing to irreversible capacity loss. The results suggest that undergrown carbon layers allowing the intrusion of solvent molecules into the interior of the hard carbon is a key factor during the synthesis stage, while the gradual formation of oxygen-containing functional groups on the surface of the hard carbon is another factor leading to irreversible loss of capacity during storage stage. This research microscopically clarifies the irreversible capacity loss mechanism on hard carbon and provides guidelines for designing and applying high ICE hard carbon for SIBs. 相似文献
34.
Background
Mapping the expression changes during breast cancer development should facilitate basic and translational research that will eventually improve our understanding and clinical management of cancer. However, most studies in this area are challenged by genetic and environmental heterogeneities associated with cancer.Methodology/Principal Findings
We conducted proteomics of the MCF10AT breast cancer model, which comprises of 4 isogenic xenograft-derived human cell lines that mimic different stages of breast cancer progression, using iTRAQ-based tandem mass spectrometry. Of more than 1200 proteins detected, 98 proteins representing at least 20 molecular function groups including kinases, proteases, adhesion, calcium binding and cytoskeletal proteins were found to display significant expression changes across the MCF10AT model. The number of proteins that showed different expression levels increased as disease progressed from AT1k pre-neoplastic cells to low grade CA1h cancer cells and high grade cancer cells. Bioinformatics revealed that MCF10AT model of breast cancer progression is associated with a major re-programming in metabolism, one of the first identified biochemical hallmarks of tumor cells (the “Warburg effect”). Aberrant expression of 3 novel breast cancer-associated proteins namely AK1, ATOX1 and HIST1H2BM were subsequently validated via immunoblotting of the MCF10AT model and immunohistochemistry of progressive clinical breast cancer lesions.Conclusion/Significance
The information generated by this study should serve as a useful reference for future basic and translational cancer research. Dysregulation of ATOX1, AK1 and HIST1HB2M could be detected as early as the pre-neoplastic stage. The findings have implications on early detection and stratification of patients for adjuvant therapy. 相似文献35.
Ebrahim Eskandari-Nasab Seyed-Shahab-adin Hasani Majid Naderi Simin Sadeghi-Bojd Mohsen Taheri 《Nucleosides, nucleotides & nucleic acids》2017,36(3):170-180
We examined the possible relationship between three RAGE polymorphisms, ?429C/T, ?374 T/A, and 63-bp deletion, and susceptibility to childhood acute lymphoblastic leukemia (ALL) in an Iranian population. This study included 75 ALL patients and 115 healthy subjects. Genotyping was performed using HEXA-ARMS-polymerase chain reaction. We found no significant association among RAGE gene polymorphisms and the risk for ALL at genotype, allelic and haplotype levels (P > 0.05). The hemoglobin levels were higher in patients with RAGE ?374 TT than in the TA carriers (P = 0.019). Our results demonstrated that the RAGE gene variations were not associated with risk of pediatrics ALL. 相似文献
36.
Knowledge of in situ copepod diet diversity is crucial for accurately describing pelagic food web structure but is challenging to achieve due to lack of an easily applicable methodology. To enable analysis with whole copepod-derived DNAs, we developed a copepod-excluding 18S rDNA-based PCR protocol. Although it is effective in depressing amplification of copepod 18S rDNA, its applicability to detect diverse eukaryotes in both mono- and mixed-species has not been demonstrated. Besides, the protocol suffers from the problem that sequences from symbiotic ciliates are overrepresented in the retrieved 18S rDNA libraries. In this study, we designed a blocking primer to make a combined primer set (copepod/symbiotic ciliate-excluding eukaryote-common: CEEC) to depress PCR amplification of symbiotic ciliate sequences while maximizing the range of eukaryotes amplified. We firstly examined the specificity and efficacy of CEEC by PCR-amplifying DNAs from 16 copepod species, 37 representative organisms that are potential prey of copepods and a natural microplankton sample, and then evaluated the efficiency in reconstructing diet composition by detecting the food of both lab-reared and field-collected copepods. Our results showed that the CEEC primer set can successfully amplify 18S rDNA from a wide range of isolated species and mixed-species samples while depressing amplification of that from copepod and targeted symbiotic ciliate, indicating the universality of CEEC in specifically detecting prey of copepods. All the predetermined food offered to copepods in the laboratory were successfully retrieved, suggesting that the CEEC-based protocol can accurately reconstruct the diets of copepods without interference of copepods and their associated ciliates present in the DNA samples. Our initial application to analyzing the food composition of field-collected copepods uncovered diverse prey species, including those currently known, and those that are unsuspected, as copepod prey. While testing is required, this protocol provides a useful strategy for depicting in situ dietary composition of copepods. 相似文献
37.
【背景】长孢葡萄穗霉菌(Stachybotrys longispora) FG216是一株稀有海洋真菌,其次生代谢产物FGFC1具有纤溶活性。进行S. longispora FG216的基因组序列分析,将充实和促进海洋微生物功能基因和次生代谢产物合成生物学的基础研究和应用研究。【目的】解析S. longispora FG216的基因组序列,分析基因组生物功能和同源相似性关系,分析次生代谢产物纤溶活性化合物FGFC1的相关基因。【方法】基于Illumina HiSeq高通量测序平台对S. longispora FG216菌株进行De Novo测序,使用SSPACE、Augustus等软件进行组装、编码基因预测、基因功能注释、物种共线性分析以及预测FGFC1次生代谢产物合成基因簇。【结果】S. longispora FG216的基因组测序总长度为45622830bp,共得到605个Scaffold,GC含量为51.31%,注释预测得到13329个编码基因和169个非编码RNA。基因组测序数据提交至国家微生物科学数据中心(编号为NMDC60016264),其中13 053、8 422、8 460、7 714和2 847个基因分别能够在NR、KEGG、KOG、GO和CAZy数据库匹配到注释信息。比较基因组学分析发现,Stachybotrys具有保守性,核心基因占基因家族总数目的71.44%,S. longispora FG216与S. chlorohalonata IBT 40285的相似性最高;同时,预测得到101个次生代谢产物合成基因簇,其中18个基因簇与已知的化合物相匹配。通过antiSMASH预测,Cluster57是编码合成FGFC1母核结构异吲哚啉酮的基因簇,与S.chlorohalonataIBT40285中的基因簇相似度为40%。【结论】海洋稀有真菌S.longisporaFG216的基因组信息已上传至国家微生物科学数据中心公开使用,为Stachybotrys种属的研究提供了重要的参考意义,同时发现了S. longispora FG216次生代谢产物纤溶活性化合物FGFC1母核部分编码基因是Cluster 57。 相似文献
38.
39.
Uteri, ovaries and oviducts from mice were collected at autopsy. Tissue slices were incubated with [3H]-PGE2 in the presence or absence of a large excess (100 fold) of nonradioactive PGE2 using 0.01M sodium phosphate buffer (pH 7.2). Bound and free PGs were separated by a filtration technique. PGE2 accumulation by the uteri was evaluated as a function of incubation time, wet weight of tissues, and reproductive state. The tissue to medium ratio (T/M) was greater than 1.0 for uteri as the time of incubation increased. This suggests the presence of PGE2 binding sites in mouse uterine tissue. Also, PGE2 accumulation was not observed in oviducts or in ovaries. 相似文献
40.
Zhou Yang Pang Bo Xiao Yingbin Zhou Simin He Bin Zhang Fan Liu Wei Peng Huali Li Peng 《Journal of physiology and biochemistry》2019,75(1):73-81
Journal of Physiology and Biochemistry - The protective effects of downregulated miR-199a-5p on ischemic and hypoxic cardiomyocytes were well recognized, but the underlying mechanism of inhibited... 相似文献