Isolation of Paenibacillus sp. and Variovorax sp. strains from decaying woods and characterization of their potential for cellulose deconstruction

Prospection of cellulose-degrading bacteria in natural environments allows the identification of novel cellulases and hemicellulases that could be useful in second-generation bioethanol production. In this work, cellulolytic bacteria were isolated from decaying native forest soils by enrichment on cellulose as sole carbon source. There was a predominance of Gram positive isolates that belonged to the phyla Proteobacteria and Firmicutes. Many primary isolates with cellulolytic activity were not pure cultures. From these consortia, isolation of pure constituents was attempted in order to test the hypothesis whether microbial consortia are needed for full degradation of complex substrates. Two isolates, CB1-2-A-5 and VG-4-A-2, were obtained as the pure constituents of CB1-2 and VG-4 consortia, respectively. Based on 16S RNA sequence, they could be classified as Variovorax paradoxus and Paenibacillus alvei. Noteworthy, only VG-4 consortium showed measurable xylan degrading capacity and signs of filter paper degradation. However, no xylan or filter paper degrading capacities were observed for the pure cultures isolated from it, suggesting that other members of this consortium were necessary for these hydrolyzing activities. Our results indicated that Paenibacillus sp. and Variovorax sp. as well as VG-4 consortium, might be a useful source of hydrolytic enzymes. Moreover, although Variovorax sp. had been previously identified in metagenomic studies of cellulolytic communities, this is the first report on the isolation and characterization of this microorganism as a cellulolytic genus.     

Potential Effects of Climate Change on the Water Level,Flora and Macro-fauna of a Large Neotropical Wetland

Possible consequences of climate change in one of the world’s largest wetlands (Ibera, Argentina) were analysed using a multi-scale approach. Climate projections coupled to hydrological models were used to analyse variability in wetland water level throughout the current century. Two potential scenarios of greenhouse gas emissions were explored, both resulting in an increase in the inter-annual fluctuations of the water level. In the scenario with higher emissions, projections also showed a long-term negative trend in water-level. To explore the possible response of biota to such water-level changes, species-area relationships of flora and aerial censuses of macro-fauna were analysed during an extraordinary dry period. Plant species richness at the basin scale was found to be highly resistant to hydrological changes, as the large dimension of the wetland acts to buffer against the water-level variations. However, local diversity decreased significantly with low water levels, leading to the loss of ecosystem resilience to additional stressors. The analysis of macro-fauna populations suggested that wetland provides refuge, in low water periods, for the animals with high dispersal ability (aquatic and migratory birds). On the contrary, the abundance of animals with low dispersal ability (mainly herbivorous species) was negatively impacted in low water periods, probably because they are required to search for alternative resources beyond the wetland borders. This period of resource scarcity was also related to increased mortality of large mammals (e.g. marsh deer) around water bodies with high anthropogenic enrichment and cyanobacteria dominance. The synergy between recurrent climatic fluctuations and additional stressors (i.e. biological invasions, eutrophication) presents an important challenge to the conservation of neotropical wetlands in the coming decades.     

Fluorescence Fluctuations and Equivalence Classes of Ca 2+ Imaging Experiments

release into the cytosol through inositol 1,4,5-trisphosphate receptors (IP₃Rs) plays a relevant role in numerous physiological processes. IP₃R-mediated signals involve -induced -release (CICR) whereby release through one open IP₃R induces the opening of other channels. IP₃Rs are apparently organized in clusters. The signals can remain localized (i.e., puffs) if CICR is limited to one cluster or become waves that propagate between clusters. puffs are the building blocks of waves. Thus, there is great interest in determining puff properties, especially in view of the current controversy on the spatial distribution of activatable IP₃Rs. puffs have been observed in intact cells with optical techniques proving that they are intrinsically stochastic. Obtaining a correct picture of their dynamics then entails being able to detect the whole range of puff sizes. puffs are observed using visible single-wavelength dyes, slow exogenous buffers (e.g., EGTA) to disrupt inter-cluster CICR and UV-photolyzable caged IP₃. Single-wavelength dyes increase their fluorescence upon calcium binding producing images that are strongly dependent on their kinetic, transport and photophysical properties. Determining the artifacts that the imaging setting introduces is particularly relevant when trying to analyze the smallest signals. In this paper we introduce a method to estimate the expected signal-to-noise ratio of imaging experiments that use single-wavelength dyes. The method is based on the Number and Brightness technique. It involves the performance of a series of experiments and their subsequent analysis in terms of a fluorescence fluctuation model with which the model parameters are quantified. Using the model, the expected signal-to-noise ratio is then computed. Equivalence classes between different experimental conditions that produce images with similar signal-to-noise ratios can then be established. The method may also be used to estimate the smallest signals that can reliably be observed with each setting.     

A new Diacyclops (Copepoda,Cyclopoida, Cyclopidae) from northwestern Argentina

No species of the genus Diacyclops has been so far cited from continental Argentina. Specimens collected from a roadside pool in the province of Catamarca on a plateau at 3700 m a.s.l. turned out to belong to a new species, Diacyclops andinus, which is described and illustrated in detail for both sexes. Main diagnostic features are: spine formula of swimming legs 3, 4, 4, 4; terminal spines of the distal endopod segment of leg 4 subequal; smooth furcal rami. The new species is a member of the D. bicuspidatus group, and is probably near the base of this line.     

Boeckella antiqua n. sp. (Copepoda,Calanoida, Centropagidae) from Patagonia

Boeckella antiqua n. sp. from samples collected in an ephemeral pond on the Patagonian plateau is described and illustrated. Diagnostic features of B. antiqua are almost exclusively related to the male fifth pair of legs, females being almost indistinguishable from those of the closely related B. poppei. The two-segmented, spine-bearing left endopod of the male fifth leg suggests that it may be the basal species in the genus.     

Adjusting culture conditions to isolate thraustochytrids from temperate and cold environments in southern Argentina

To study thraustochytrids from temperate and cold environments of Southern Argentina, the standard cultivation methodologies have been modified because many of the microorganisms detected by microscopic examination in both the original samples and the colonized baits failed to be successfully isolated in standard culture media. As a result, 35 strains, most of them having a very low growth rate, were isolated. Alternative procedures are proposed according to the nature of the sample, the characteristics of the thraustochytrid to be isolated, and the presence of contaminating microorganisms. Modifications proposed include the use of a newly formulated culture medium (Mar Chiquita, containing glucose, gelatine hydrolysate, peptone, and corn steep liquor as main carbon and nitrogen sources). In addition, the effects of the nutrient composition and agar concentration of culture media on the relative growth rates of the isolates were studied in an attempt to determine the most suitable conditions for the cultivation of new strains of thraustochytrids. The goal of this study is to develop a standard methodology, allowing us to grow baitable “elusive” thraustochytrid strains, and that could be applied to improve the isolation and the study of the undocumented biodiversity of this group of microorganisms from different environments.     

Living in an urban pod: Seed predation and parasitism of bruchid beetles in a native tree species

1. Urbanisation is one of the main drivers of insect species loss worldwide. However, its impacts on ecological interactions involving insects still deserve further research, especially seed predation and parasitism of seed predators.
2. Here, we evaluated the seed predation rate by the specialist bruchid beetle Pseudopachymerina spinipes and its parasitism rate in the native tree Vachellia caven (Fabaceae) along an urbanisation gradient in Cordoba (Argentina). Since resource availability can influence these ecological interactions, we also investigated whether seed and prey availability could affect seed predation and parasitism rates, respectively.
3. We sampled trees in 10 sampling sites along an urbanisation gradient estimated by the Normalised Difference Vegetation Index (NDVI) within a 100 m radius. In our system, sites with low NDVI, beyond representing the low amount of vegetation cover, also indicate high surface temperature and low availability of host trees.
4. Seed predation in V. caven and the parasitism rate of P. spinipes were significantly reduced with increasing urbanisation. Notably, seed availability at the pod level did not affect seed predation rate, while prey availability was negatively correlated with parasitism rate.
5. These findings suggest a deleterious effect of urbanisation on the studied antagonistic interactions, giving no support to the idea of resource limitation effects.